Site Name: ip-172-31-24-227.ec2.internal
Build Name: CIP-Linux-3.10.0-123.8.1.el7.x86_64-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20170419-0400-Nightly (related builds)
Time: 2017-04-19T00:07:29 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.8.1.el7.x86_64
OS Version: #1 SMP Mon Sep 22 19:06:58 UTC 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Configure (0 errors, 1 warnings)

Start Time: 2017-04-19T00:07:19 EDT
End Time: 2017-04-19T00:07:25 EDT
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release -DCIP_PYTHON_USE_QT4:BOOL=TRUE "-GUnix Makefiles" "/home/centos/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- vtkInfovisBoostGraphAlgorithms not found! CIP will NOT use Boost
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/__init__.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/emphysema_classification.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/body_composition_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_montage.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_qc.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/ct_registration_qc.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/lung_segmentation_qc.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_base.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_vs_core_partition.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/locate_CARDIA_gated_artifacts.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/utils/geometry_topology_data_extract_slices.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /home/centos/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Installing: /home/centos/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CIP_PYTHON_USE_QT4


-- Build files have been written to: /home/centos/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 2 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2017-04-19T00:07:29 EDT
End Time: 2017-04-19T00:10:05 EDT

CMake Error at /usr/share/cmake/Modules/FindQt4.cmake:661 (message):

  Could NOT find QtCore.  Check
  /.../CIP-build/VTKv7-build/CMakeFiles/CMakeError.log for
  more details.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)


-- Configuring incomplete, errors occurred!
[ 29%] Performing build step for 'VTKv7'
-- Group StandAlone modules: vtkChartsCore;vtkCommonComputationalGeometry;vtkCommonCore;vtkCommonDataModel;vtkCommonExecutionModel;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkDomainsChemistry;vtkFiltersAMR;vtkFiltersCore;vtkFiltersExtraction;vtkFiltersFlowPaths;vtkFiltersGeneral;vtkFiltersGeneric;vtkFiltersGeometry;vtkFiltersHybrid;vtkFiltersHyperTree;vtkFiltersImaging;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelImaging;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersSources;vtkFiltersStatistics;vtkFiltersTexture;vtkFiltersVerdict;vtkIOAMR;vtkIOCore;vtkIOEnSight;vtkIOExodus;vtkIOGeometry;vtkIOImage;vtkIOImport;vtkIOInfovis;vtkIOLSDyna;vtkIOLegacy;vtkIOMINC;vtkIOMovie;vtkIONetCDF;vtkIOPLY;vtkIOParallel;vtkIOParallelXML;vtkIOSQL;vtkIOTecplotTable;vtkIOVideo;vtkIOXML;vtkIOXMLParser;vtkImagingColor;vtkImagingCore;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInfovisCore;vtkInfovisLayout;vtkParallelCore
CMake Error at /usr/share/cmake/Modules/FindQt4.cmake:661 (message):

  Could NOT find QtCore.  Check
  /.../CIP-build/VTKv7-build/CMakeFiles/CMakeError.log for
  more details.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)


-- Configuring incomplete, errors occurred!
[  0%] Built target VTKData
[  0%] Built target vtksys
[100%] Built target ITKReview
[100%] Built target ITKReview-all
[100%] Built target itkTestDriver
[100%] Built target ITKTestKernel-all
[100%] Built target ITKVideoCore
[100%] Built target ITKVideoCore-all
[100%] Built target ITKVideoFiltering-all
[100%] Built target ITKVideoIO
[100%] Built target ITKVideoIO-all
Linking CXX shared library ../../../../lib/libITKVtkGlue-4.11.so

/usr/bin/ld: cannot find -lvtkRenderingOpenGL

/usr/bin/ld: cannot find -lvtkCommonCore

/usr/bin/ld: cannot find -lvtksys

/usr/bin/ld: cannot find -lvtkCommonDataModel

/usr/bin/ld: cannot find -lvtkCommonMath

/usr/bin/ld: cannot find -lvtkCommonMisc

/usr/bin/ld: cannot find -lvtkCommonSystem

/usr/bin/ld: cannot find -lvtkCommonTransforms

/usr/bin/ld: cannot find -lvtkCommonExecutionModel

/usr/bin/ld: cannot find -lvtkFiltersCore

/usr/bin/ld: cannot find -lvtkIOImage

/usr/bin/ld: cannot find -lvtkDICOMParser

/usr/bin/ld: cannot find -lvtkmetaio

/usr/bin/ld: cannot find -lvtkjpeg

/usr/bin/ld: cannot find -lvtkpng

/usr/bin/ld: cannot find -lvtktiff

/usr/bin/ld: cannot find -lvtkImagingCore

/usr/bin/ld: cannot find -lvtkImagingHybrid

/usr/bin/ld: cannot find -lvtkRenderingCore

/usr/bin/ld: cannot find -lvtkCommonColor

/usr/bin/ld: cannot find -lvtkCommonComputationalGeometry

/usr/bin/ld: cannot find -lvtkFiltersGeneral

/usr/bin/ld: cannot find -lvtkFiltersGeometry

/usr/bin/ld: cannot find -lvtkFiltersSources

/usr/bin/ld: cannot find -lvtkRenderingFreeType

/usr/bin/ld: cannot find -lvtkfreetype

/usr/bin/ld: cannot find -lvtkInteractionStyle

/usr/bin/ld: cannot find -lvtkFiltersExtraction

/usr/bin/ld: cannot find -lvtkFiltersStatistics

/usr/bin/ld: cannot find -lvtkImagingFourier

/usr/bin/ld: cannot find -lvtkalglib

/usr/bin/ld: cannot find -lvtkImagingSources

collect2: error: ld returned 1 exit status

[100%] Built target ITKVtkGlue
[100%] Built target ITKVtkGlue-all
[100%] Built target MGHIO
[100%] Built target MGHIO-all
[ 55%] No install step for 'ITKv4'
[ 56%] Completed 'ITKv4'
[ 61%] Built target ITKv4
[ 63%] Performing update step for 'SlicerExecutionModel'
[ 64%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
Build Log line 2674


  File: Common/cipChestDataViewer.h
  Line: 34 
-- Build files have been written to: /.../CIP-build/CIP-build
[ 89%] Performing forcebuild step for 'CIP'
[ 90%] Performing build step for 'CIP'
[  1%] Copying Resource files
[  1%] Built target copy-external-files
[  1%] Built target copy-input-files
[  4%] Built target CIPUtilities
[  4%] Built target generateChestConventions
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o
In file included from /.../CIP/Common/cipChestDataViewer.cxx:1:0:

/.../CIP/Common/cipChestDataViewer.h:34:33: fatal error: vtkImagePlaneWidget.h: No such file or directory

 #include "vtkImagePlaneWidget.h"
                                 ^
compilation terminated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/cipHelper.cxx.o

Build Log line 2679


  File: Common/cipHelper.cxx
  Line: 33 
/.../CIP/Common/cipHelper.cxx:33:28: fatal error: vtkGraphLayout.h: No such file or directory

 #include "vtkGraphLayout.h"
                            ^
compilation terminated.
[  4%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkSimpleLungMask.cxx.o

Build Log line 2684


  File: Common/vtkSimpleLungMask.cxx
  Line: 25 
/.../CIP/Common/vtkSimpleLungMask.cxx:25:38: fatal error: vtkImageSeedConnectivity.h: No such file or directory

 #include "vtkImageSeedConnectivity.h"
                                      ^
compilation terminated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkComputeAirwayWallPolyData.cxx.o

Build Log line 2689


  File: Common/vtkComputeAirwayWallPolyData.cxx
  Line: 36 
/.../CIP/Common/vtkComputeAirwayWallPolyData.cxx:36:38: fatal error: vtkImageSeedConnectivity.h: No such file or directory

 #include "vtkImageSeedConnectivity.h"
                                      ^
compilation terminated.
[  5%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkComputeCentroid.cxx.o

Build Log line 2694


  File: Common/vtkComputeCentroid.cxx
  Line: 28 
/.../CIP/Common/vtkComputeCentroid.cxx:28:38: fatal error: vtkImageSeedConnectivity.h: No such file or directory

 #include "vtkImageSeedConnectivity.h"
                                      ^
compilation terminated.
[  6%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkComputeMonogenicSignal.cxx.o

Build Log line 2699


  File: Common/vtkComputeMonogenicSignal.cxx
  Line: 24 
/.../CIP/Common/vtkComputeMonogenicSignal.cxx:24:33: fatal error: vtkImageMathematics.h: No such file or directory

 #include "vtkImageMathematics.h"
                                 ^
compilation terminated.
[  7%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkMaskBoundingBox.cxx.o

Build Log line 2704


  File: Common/vtkMaskBoundingBox.cxx
  Line: 4 
/.../CIP/Common/vtkMaskBoundingBox.cxx:4:36: fatal error: vtkImageToImageStencil.h: No such file or directory

 #include <vtkImageToImageStencil.h>
                                    ^
compilation terminated.
Linking CXX static library /.../CIP-build/lib/libCIPCommon.a

/usr/bin/ar: CMakeFiles/CIPCommon.dir/cipChestDataViewer.cxx.o: No such file or directory

[ 16%] Built target CIPCommon
[ 17%] Building CXX object IO/CMakeFiles/CIPIO.dir/cipGeometryTopologyDataIO.cxx.o
In file included from /.../CIP/IO/cipGeometryTopologyDataIO.cxx:1:0:

Build Log line 2713


  File: IO/cipGeometryTopologyDataIO.h
  Line: 14 
/.../CIP/IO/cipGeometryTopologyDataIO.h:14:30: fatal error: libxml/xmlwriter.h: No such file or directory

 #include <libxml/xmlwriter.h>
                              ^
compilation terminated.
Linking CXX static library /.../CIP-build/lib/libCIPIO.a

/usr/bin/ar: CMakeFiles/CIPIO.dir/cipGeometryTopologyDataIO.cxx.o: No such file or directory

[ 17%] Built target CIPIO

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipHelperTEST'.  Stop.

[ 18%] Built target cipHelperTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipLobeSurfaceModelTEST'.  Stop.

[ 18%] Built target cipLobeSurfaceModelTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipNelderMeadSimplexOptimizerTEST'.  Stop.

[ 18%] Built target cipNelderMeadSimplexOptimizerTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST'.  Stop.

[ 18%] Built target itkCIPExtractChestLabelMapImageFilterTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST'.  Stop.

[ 19%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPIO.a', needed by `IO/Testing/cipChestRegionChestTypeLocationsIOTEST'.  Stop.
[ 19%] Built target cipChestRegionChestTypeLocationsIOTEST
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPIO.a', needed by `IO/Testing/cipLobeSurfaceModelIOTEST'.  Stop.
[ 19%] Built target cipLobeSurfaceModelIOTEST
[ 20%] Built target ConvertDicomLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPIO.a', needed by `bin/ConvertDicom'.  Stop.
[ 20%] Built target ConvertDicom
[ 20%] Building CXX object CommandLineTools/ConvertDicom/CMakeFiles/ConvertDicomTest.dir/Testing/ConvertDicomTest.cxx.o
In file included from /.../CIP/CommandLineTools/ConvertDicom/Testing/ConvertDicomTest.cxx:1:0:
The maximum number of reported warnings or errors has been reached!!!

View Errors Summary


Build Warnings (2)
        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff
-- Building tiff version 4.0.6
-- libtiff library version 5.2.4
-- CMAKE_HOST_SYSTEM_PROCESSOR set to x86_64
-- HOST_FILLORDER set to FILLORDER_LSB2MSB
-- HOST_BIG_ENDIAN set to 0
-- HAVE_IEEEFP set to 1

CMake Warning at /usr/share/cmake/Modules/FindQt4.cmake:657 (message):

  /.../CIP-build/CIPPython-install/bin/qmake reported
  QT_INSTALL_LIBS as "/.../CIP-build/CIPPython-install/lib"
  but QtCore could not be found there.  Qt is NOT installed correctly for the
  target build environment.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)



        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff
-- Building tiff version 4.0.6
-- libtiff library version 5.2.4
-- CMAKE_HOST_SYSTEM_PROCESSOR set to x86_64
-- HOST_FILLORDER set to FILLORDER_LSB2MSB
-- HOST_BIG_ENDIAN set to 0
-- HAVE_IEEEFP set to 1

CMake Warning at /usr/share/cmake/Modules/FindQt4.cmake:657 (message):

  /.../CIP-build/CIPPython-install/bin/qmake reported
  QT_INSTALL_LIBS as "/.../CIP-build/CIPPython-install/lib"
  but QtCore could not be found there.  Qt is NOT installed correctly for the
  target build environment.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)




View Warnings Summary


Test (13  passed, 9 failed, 53 not run)
 
View Tests Summary