Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20170401-0400-Nightly (related builds)
Time: 2017-04-01T00:02:40 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Stage: Update (0 errors, 0 warnings)

Start Time: 2017-04-01T00:02:20 EDT
End Time: 2017-04-01T00:02:21 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 2

Configure (0 errors, 0 warnings)

Start Time: 2017-04-01T00:02:22 EDT
End Time: 2017-04-01T00:02:40 EDT
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Using Infovis Boost
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: GraphCutsOptimization
-- Configuring SEM CLI module: SegmentLungAirways
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/paths.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions_static.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/cipChestConventionsXmlParser.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/emphysema_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/body_composition_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/airway_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/nodule_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/qc_montage.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/nodule_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/lung_splitter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_CLIs_description.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_polydata.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_CARDIA_gated_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/locate_cardiac_gating_artifacts.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/interpolate_volume.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (6 errors, 2 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2017-04-01T00:02:40 EDT
End Time: 2017-04-01T00:17:40 EDT

CMake Error at /usr/share/cmake/Modules/FindQt4.cmake:661 (message):

  Could NOT find QtCore.  Check
  /.../CIP-build/VTKv7-build/CMakeFiles/CMakeError.log for
  more details.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)


-- Configuring incomplete, errors occurred!
[ 23%] Performing build step for 'VTKv7'
-- Group StandAlone modules: vtkChartsCore;vtkCommonComputationalGeometry;vtkCommonCore;vtkCommonDataModel;vtkCommonExecutionModel;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkDomainsChemistry;vtkFiltersAMR;vtkFiltersCore;vtkFiltersExtraction;vtkFiltersFlowPaths;vtkFiltersGeneral;vtkFiltersGeneric;vtkFiltersGeometry;vtkFiltersHybrid;vtkFiltersHyperTree;vtkFiltersImaging;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelImaging;vtkFiltersPoints;vtkFiltersProgrammable;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersSources;vtkFiltersStatistics;vtkFiltersTexture;vtkFiltersVerdict;vtkIOAMR;vtkIOCore;vtkIOEnSight;vtkIOExodus;vtkIOGeometry;vtkIOImage;vtkIOImport;vtkIOInfovis;vtkIOLSDyna;vtkIOLegacy;vtkIOMINC;vtkIOMovie;vtkIONetCDF;vtkIOPLY;vtkIOParallel;vtkIOParallelXML;vtkIOSQL;vtkIOTecplotTable;vtkIOVideo;vtkIOXML;vtkIOXMLParser;vtkImagingColor;vtkImagingCore;vtkImagingFourier;vtkImagingGeneral;vtkImagingHybrid;vtkImagingMath;vtkImagingMorphological;vtkImagingSources;vtkImagingStatistics;vtkImagingStencil;vtkInfovisCore;vtkInfovisLayout;vtkParallelCore
CMake Error at /usr/share/cmake/Modules/FindQt4.cmake:661 (message):

  Could NOT find QtCore.  Check
  /.../CIP-build/VTKv7-build/CMakeFiles/CMakeError.log for
  more details.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)


-- Configuring incomplete, errors occurred!
[  0%] Built target VTKData
[  0%] Built target vtksys
-- Enabled ITKVideoFiltering, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Filter ZLIB is ON

CMake Error at /.../CIP-build/VTKv7/CMake/vtkModuleAPI.cmake:120 (message):

  Requested modules not available:

    vtkRenderingOpenGL2
Call Stack (most recent call first):
  Modules/Bridge/VtkGlue/CMakeLists.txt:38 (vtk_module_config)


-- Configuring incomplete, errors occurred!
[ 32%] Performing build step for 'ITKv4'
-- Enabled ITKAnisotropicSmoothing, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVideoFiltering, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVideoIO, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKVtkGlue, requested by Module_ITKVtkGlue.
-- Enabled ITKWatersheds, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_DEFAULT_MODULES.
-- Enabled MGHIO, requested by Module_MGHIO.
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a (found version "1.2.3") 
-- Found ZLIB: /.../CIP-build/zlib-install/lib/libzlib.a  
-- Filter ZLIB is ON

CMake Error at /.../CIP-build/VTKv7/CMake/vtkModuleAPI.cmake:120 (message):

  Requested modules not available:

    vtkRenderingOpenGL2
Call Stack (most recent call first):
  Modules/Bridge/VtkGlue/CMakeLists.txt:38 (vtk_module_config)


-- Configuring incomplete, errors occurred!
[  0%] Built target ITKData
[  1%] Built target itkdouble-conversion
[ 84%] No install step for 'teem'
[ 85%] Completed 'teem'
[ 89%] Built target teem
[ 90%] Performing configure step for 'CIP'
Not searching for unused variables given on the command line.
loading initial cache file /.../CIP-build/CIP-prefix/tmp/CIP-cache.cmake
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Configuring incomplete, errors occurred!

CMake Error at /.../CIP-build/VTKv7/CMake/vtkModuleAPI.cmake:120 (message):

  Requested modules not available:

    vtkRenderingOpenGL2
Call Stack (most recent call first):
  /.../CIP-build/ITKv4-build/lib/cmake/ITK-4.11/Modules/ITKVtkGlue.cmake:36 (vtk_module_config)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:54 (include)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:26 (itk_module_load)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:84 (_itk_module_config_recurse)
  /.../CIP-build/ITKv4-build/ITKConfig.cmake:68 (itk_module_config)
  /usr/share/cmake/Modules/FindITK.cmake:48 (find_package)
  CIP.cmake:37 (FIND_PACKAGE)
  CMakeLists.txt:38 (include)


[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- Configuring incomplete, errors occurred!

CMake Error at /.../CIP-build/VTKv7/CMake/vtkModuleAPI.cmake:120 (message):

  Requested modules not available:

    vtkRenderingOpenGL2
Call Stack (most recent call first):
  /.../CIP-build/ITKv4-build/lib/cmake/ITK-4.11/Modules/ITKVtkGlue.cmake:36 (vtk_module_config)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:54 (include)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:26 (itk_module_load)
  /.../CIP-build/ITKv4/CMake/ITKModuleAPI.cmake:84 (_itk_module_config_recurse)
  /.../CIP-build/ITKv4-build/ITKConfig.cmake:68 (itk_module_config)
  /usr/share/cmake/Modules/FindITK.cmake:48 (find_package)
View Errors Summary


Build Warnings (2)
-- GLX_DEFINES_TYPE_GLXextFuncPtr_AS_EMPTY=
-- GLX_DECLARES_FUNCTION_glXGetProcAddressARB=1
-- GLX_DECLARES_FUNCTION_glXGetProcAddress=1
-- GLX_DECLARES_FUNCTION_glXGetProcAddressARB_AS_EMPTY=
-- GLX_DECLARES_FUNCTION_glXGetProcAddress_AS_EMPTY=
-- GLX_DEFINES_TYPE_GLXFBConfig=1
-- Looking for glXGetProcAddressARB
-- Looking for glXGetProcAddressARB - found
-- Looking for glXGetProcAddressARB in GL/glx.h
-- Looking for glXGetProcAddressARB in GL/glx.h - TRUE

CMake Warning at /usr/share/cmake/Modules/FindQt4.cmake:657 (message):

  /.../CIP-build/CIPPython-install/bin/qmake reported
  QT_INSTALL_LIBS as
  "/.../CIP-build/CIPPython-install/lib" but QtCore could
  not be found there.  Qt is NOT installed correctly for the target build
  environment.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)



        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff
-- Building tiff version 4.0.6
-- libtiff library version 5.2.4
-- CMAKE_HOST_SYSTEM_PROCESSOR set to x86_64
-- HOST_FILLORDER set to FILLORDER_LSB2MSB
-- HOST_BIG_ENDIAN set to 0
-- HAVE_IEEEFP set to 1

CMake Warning at /usr/share/cmake/Modules/FindQt4.cmake:657 (message):

  /.../CIP-build/CIPPython-install/bin/qmake reported
  QT_INSTALL_LIBS as
  "/.../CIP-build/CIPPython-install/lib" but QtCore could
  not be found there.  Qt is NOT installed correctly for the target build
  environment.
Call Stack (most recent call first):
  GUISupport/Qt/CMakeLists.txt:82 (find_package)




View Warnings Summary


Test (65  passed, 11 failed, 0 not run)
 
View Tests Summary