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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/centos/Projects/CIP-master-build/CIP-build

-- Configuring done
-- Generating done
-- Build files have been written to: /.../CIP-master-build/CIP-build
[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
[  2%] Built target CIPUtilities
[ 15%] Built target CIPCommon
[ 16%] Built target ChestConventions
[ 17%] Built target CIPIO
running build_ext

Warning: Extension name 'ChestConventions' does not match fully qualified name 'cip_python.wrap_ChestConventions' of '/.../CIP-master/cip_python/wrap_ChestConventions.pyx'

Compiling /.../CIP-master/cip_python/wrap_ChestConventions.pyx because it depends on /.../CIP-master-build/CIPPython-install/lib/python2.7/site-packages/Cython/Includes/libcpp/string.pxd.
[1/1] Cythonizing /.../CIP-master/cip_python/wrap_ChestConventions.pyx
building 'ChestConventions' extension
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP-master/Common/ -I/.../CIP-master-build/CIPPython-install/include/python2.7 -c /.../CIP-master/cip_python/wrap_ChestConventions.cpp -o build/temp.linux-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared -L/.../CIP-master-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-master-build/CIPPython-install/lib,--no-as-needed build/temp.linux-x86_64-2.7/.../CIP-master/cip_python/wrap_ChestConventions.o -L/.../CIP-master-build/lib -L/.../CIP-master-build/CIPPython-install/lib -lChestConventions -lpython2.7 -o /.../CIP-master-build/CIP-build/cip_python/ChestConventions.so
[ 17%] Built target CIP_PYTHON
[ 17%] Built target cipHelperTEST
[ 18%] Built target cipLobeSurfaceModelTEST
[ 18%] Built target cipNelderMeadSimplexOptimizerTEST
[ 18%] Built target itkCIPExtractChestLabelMapImageFilterTEST
[ 19%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
[ 19%] Built target cipChestRegionChestTypeLocationsIOTEST
[ 20%] Built target cipGeometryTopologyDataIOTEST
[ 20%] Built target cipLobeSurfaceModelIOTEST

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