Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160805-0400-Nightly (related builds)
Time: 2016-08-05T00:19:17 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Configure (0 errors, 0 warnings)

Start Time: 2016-08-05T00:19:04 EDT
End Time: 2016-08-05T00:19:16 EDT
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
-- VTK Built with BOOST Graph
----------- DONE ------------
Appending new list
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
-- Configuring SEM CLI module: ReadParticlesWriteConnectedParticles
-- Configuring SEM CLI module: LabelAirwayParticlesByGeneration
-- Configuring SEM CLI module: GenerateStatisticsForAirwayGenerationLabeling
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/chest_conventions.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/geometry_topology_data.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/common/tests/test_geometry_topology_data.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_bandwidth.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_xml_points.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_histogram_extractors.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/tests/test_hist_dist_scikit_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/lattice_classifier.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/apply_reader_labels.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/classify_image_subtypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/distance_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_xmlpoints.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/emphysemaClassification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/local_histogram.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/get_ct_patch_from_center.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/kde_histogram_feature_extractor_from_ROI.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_knn.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/classification/hist_dist_scikit_knn.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/tests/test_image_reader_writer.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/input_output/image_reader_writer.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/base.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/setup.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip_python_interfaces.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/cip.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/cip/generate_classes.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/interfaces/unu/unu.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/body_composition_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/example.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/tests/test_vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/cip_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/parenchyma_phenotype_workflow_autocase.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/vessel_particles_mask_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflows/lung_lobe_segmentation_workflow.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_convention_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/cip_node.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/nipype/workflow_dispatcher.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/diaphragm_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/feature_strength_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/multires_vessel_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_airway_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/tests/test_vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/particle_metrics.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/vessel_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/fissure_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/chest_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/particles/airway_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/tests/test_parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/diaphragm_thickness.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/gas_trapping.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/bronchiectasis.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/emphysema_severity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/body_composition_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/laa_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/parenchyma_phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/phenotypes.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/phenotypes/vasculature_phenotypes.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/vasculature_qc.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/__init__.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/qualitycontrol/xml_points_qc.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/cip_registration.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/registration/tests
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/comput_image_similarity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_chest_atlas.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/construct_pec_atlas_from_filenames.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/gaussian_rician.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/pectoralis_segmentor.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/register_tobase_get_closest.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/segment_chest_with_atlas.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/tests/test_rind_vs_core_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/slic_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/grid_segmenter.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/chest_partition_manager.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/segmentation/rind_vs_core_partition.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/WeightedFeatureMapDensity.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/generate_overlay_image.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_closest_cases.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/get_mi_similarity_vec.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/polynomial_feature_map.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/query_dicom_directories.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_anonymize_dicom.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_feature_maps.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_remap_lm.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/tests/test_region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/weighted_feature_map_densities.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/compute_dice_coefficient.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_CLIs.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/cluster_particles.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_nrrds_write_vtk.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/quick_airway_vessel_segmentation.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/apply_label_from_classification.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/read_geometrytopologypoint_write_dataframe.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/region_type_parser.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/utils/remap_lm.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/__init__.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles_volume.py
-- Up-to-date: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/display_particles.py
-- Installing: /home/ec2-user/Projects/CIP-build/CIP-build/cip_python/visualization/tests
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 2 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-08-05T00:19:17 EDT
End Time: 2016-08-05T00:20:35 EDT

Build Log line 1408


  File: Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx
  Line: 1110 
-- Generating done
-- Build files have been written to: /.../CIP-build/CIP-build
[ 91%] Performing forcebuild step for 'CIP'
[ 92%] Performing build step for 'CIP'
[  1%] Built target generateChestConventions
[  1%] Built target copy-external-files
[  1%] Built target copy-input-files
[  3%] Built target CIPUtilities
[  3%] Building CXX object Common/CMakeFiles/CIPCommon.dir/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx.o
/.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx: In member function ‘double vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter::GetAngleBetweenVectors(double*, double*, bool)’:

/.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx:1110:8: error: ‘abs’ is not a member of ‘std’

   if ( std::abs( arg ) > 1.0 )
        ^

/usr/bin/ar: CMakeFiles/CIPCommon.dir/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx.o: No such file or directory

[ 19%] Built target CIPCommon
[ 21%] Built target CIPIO

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipHelperTEST'.  Stop.

[ 21%] Built target cipHelperTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipLobeSurfaceModelTEST'.  Stop.

[ 21%] Built target cipLobeSurfaceModelTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/cipNelderMeadSimplexOptimizerTEST'.  Stop.

[ 21%] Built target cipNelderMeadSimplexOptimizerTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPExtractChestLabelMapImageFilterTEST'.  Stop.

[ 21%] Built target itkCIPExtractChestLabelMapImageFilterTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `Common/Testing/itkCIPMergeChestLabelMapsImageFilterTEST'.  Stop.

[ 22%] Built target itkCIPMergeChestLabelMapsImageFilterTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `IO/Testing/cipChestRegionChestTypeLocationsIOTEST'.  Stop.

[ 22%] Built target cipChestRegionChestTypeLocationsIOTEST

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `IO/Testing/cipLobeSurfaceModelIOTEST'.  Stop.

[ 23%] Built target cipLobeSurfaceModelIOTEST
[ 24%] Built target ConvertDicomLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ConvertDicom'.  Stop.

[ 24%] Built target ConvertDicom
[ 25%] Built target MergeParticleDataSetsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/MergeParticleDataSets'.  Stop.

[ 25%] Built target MergeParticleDataSets
[ 25%] Built target RemoveParticlesFromParticlesDataSetLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RemoveParticlesFromParticlesDataSet'.  Stop.

[ 26%] Built target RemoveParticlesFromParticlesDataSet
[ 26%] Built target ExtractParticlesFromChestRegionChestTypeLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ExtractParticlesFromChestRegionChestType'.  Stop.

[ 27%] Built target ExtractParticlesFromChestRegionChestType
[ 28%] Built target GenerateOtsuLungCastLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateOtsuLungCast'.  Stop.

[ 28%] Built target GenerateOtsuLungCast
[ 29%] Built target GenerateAtlasConvexHullLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateAtlasConvexHull'.  Stop.

[ 29%] Built target GenerateAtlasConvexHull
[ 29%] Built target RegisterLungAtlasLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RegisterLungAtlas'.  Stop.

[ 30%] Built target RegisterLungAtlas
[ 31%] Built target ResampleLabelMapLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ResampleLabelMap'.  Stop.

[ 32%] Built target ResampleLabelMap
[ 33%] Built target RescaleLabelMapLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RescaleLabelMap'.  Stop.

[ 33%] Built target RescaleLabelMap
[ 33%] Built target ResampleCTLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ResampleCT'.  Stop.

[ 34%] Built target ResampleCT
[ 35%] Built target QualityControlLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/QualityControl'.  Stop.

[ 35%] Built target QualityControl
[ 35%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/RemoveChestTypeFromLabelMapUsingParticles'.  Stop.

[ 36%] Built target RemoveChestTypeFromLabelMapUsingParticles
[ 37%] Built target SegmentLungLobesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/SegmentLungLobes'.  Stop.

[ 37%] Built target SegmentLungLobes
[ 38%] Built target ReadDicomWriteTagsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ReadDicomWriteTags'.  Stop.

[ 38%] Built target ReadDicomWriteTags
[ 39%] Built target SplitLeftLungRightLungLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/SplitLeftLungRightLung'.  Stop.

[ 39%] Built target SplitLeftLungRightLung
[ 39%] Built target ExtractChestLabelMapLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ExtractChestLabelMap'.  Stop.

[ 40%] Built target ExtractChestLabelMap
[ 40%] Built target LabelParticlesByChestRegionChestTypeLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/LabelParticlesByChestRegionChestType'.  Stop.

[ 41%] Built target LabelParticlesByChestRegionChestType
[ 42%] Built target GenerateStenciledLabelMapFromParticlesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateStenciledLabelMapFromParticles'.  Stop.

[ 42%] Built target GenerateStenciledLabelMapFromParticles
[ 43%] Built target GenerateDistanceMapFromLabelMapLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateDistanceMapFromLabelMap'.  Stop.

[ 43%] Built target GenerateDistanceMapFromLabelMap
[ 44%] Built target FilterVesselParticleDataLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/FilterVesselParticleData'.  Stop.

[ 44%] Built target FilterVesselParticleData
[ 44%] Built target FilterAirwayParticleDataLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/FilterAirwayParticleData'.  Stop.

[ 45%] Built target FilterAirwayParticleData
[ 46%] Built target ReadNRRDsWriteVTKLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ReadNRRDsWriteVTK'.  Stop.

[ 46%] Built target ReadNRRDsWriteVTK
[ 47%] Built target ReadVTKWriteNRRDsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ReadVTKWriteNRRDs'.  Stop.

[ 47%] Built target ReadVTKWriteNRRDs
[ 48%] Built target ComputeCrossSectionalAreaLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ComputeCrossSectionalArea'.  Stop.

[ 48%] Built target ComputeCrossSectionalArea
[ 49%] Built target ComputeIntensityStatisticsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ComputeIntensityStatistics'.  Stop.

[ 49%] Built target ComputeIntensityStatistics
[ 50%] Built target FilterFissureParticleDataLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/FilterFissureParticleData'.  Stop.

[ 50%] Built target FilterFissureParticleData
[ 50%] Built target GenerateLobeSurfaceModelsHelper
[ 51%] Built target GenerateLobeSurfaceModelsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateLobeSurfaceModels'.  Stop.

[ 52%] Built target GenerateLobeSurfaceModels
[ 53%] Built target ClassifyFissureParticlesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ClassifyFissureParticles'.  Stop.

[ 54%] Built target ClassifyFissureParticles
[ 55%] Built target CropLungLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/CropLung'.  Stop.

[ 55%] Built target CropLung
[ 56%] Built target GenerateModelLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateModel'.  Stop.

[ 56%] Built target GenerateModel
[ 57%] Built target GenerateImageSubVolumesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateImageSubVolumes'.  Stop.

[ 57%] Built target GenerateImageSubVolumes
[ 58%] Built target GenerateMedianFilteredImageLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateMedianFilteredImage'.  Stop.

[ 58%] Built target GenerateMedianFilteredImage
[ 59%] Built target FindPatchMatchLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/FindPatchMatch'.  Stop.

[ 59%] Built target FindPatchMatch
[ 60%] Built target TransferRegionAndTypeIndicesToFromPointsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/TransferRegionAndTypeIndicesToFromPoints'.  Stop.

[ 60%] Built target TransferRegionAndTypeIndicesToFromPoints
[ 61%] Built target EvaluateLungLobeSegmentationResultsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/EvaluateLungLobeSegmentationResults'.  Stop.

[ 61%] Built target EvaluateLungLobeSegmentationResults
[ 62%] Built target ConvertLabelMapValueToChestRegionChestTypeLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ConvertLabelMapValueToChestRegionChestType'.  Stop.

[ 62%] Built target ConvertLabelMapValueToChestRegionChestType
[ 63%] Built target GenerateParenchymaPhenotypesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateParenchymaPhenotypes'.  Stop.

[ 63%] Built target GenerateParenchymaPhenotypes
[ 64%] Built target ComputeDistanceMapLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ComputeDistanceMap'.  Stop.

[ 64%] Built target ComputeDistanceMap
[ 65%] Built target PerturbParticlesLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/PerturbParticles'.  Stop.

[ 65%] Built target PerturbParticles
[ 66%] Built target ReadWriteRegionAndTypePointsLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/ReadWriteRegionAndTypePoints'.  Stop.

[ 66%] Built target ReadWriteRegionAndTypePoints
[ 67%] Built target PerformMorphologicalLib

gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/PerformMorphological'.  Stop.

[ 67%] Built target PerformMorphological
[ 68%] Built target GenerateOverlayImagesLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GenerateOverlayImages'.  Stop.
[ 68%] Built target GenerateOverlayImages
[ 68%] Built target GetTransformationSimilarityMetricLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GetTransformationSimilarityMetric'.  Stop.
[ 69%] Built target GetTransformationSimilarityMetric
[ 70%] Built target GetTransformationKappa2DLib
gmake[5]: *** No rule to make target `/.../CIP-build/lib/libCIPCommon.a', needed by `bin/GetTransformationKappa2D'.  Stop.
[ 71%] Built target GetTransformationKappa2D
The maximum number of reported warnings or errors has been reached!!!

View Errors Summary


Build Warnings (2)
Build Log line 1411


  File: Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx
  Line: 1110 
/.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx:1110:8: note: suggested alternative:

In file included from /.../CIP-build/VTKv6/Common/Core/vtkSystemIncludes.h:52:0,
                 from /.../CIP-build/VTKv6/Common/Core/vtkIndent.h:25,
                 from /.../CIP-build/VTKv6/Common/Core/vtkObjectBase.h:44,
                 from /.../CIP-build/VTKv6/Common/Core/vtkObject.h:42,
                 from /.../CIP-build/VTKv6/Common/Core/vtkPoints.h:24,
                 from /.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.h:103,
                 from /.../CIP/Common/vtkCIPAirwayParticlesToConnectedAirwayParticlesFilter.cxx:9:

Build Log line 1419


  File: /usr/include/stdlib.h
  Line: 770 
/usr/include/stdlib.h:770:12: note:   ‘abs’

 extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur;
            ^
Linking CXX static library /.../CIP-build/lib/libCIPCommon.a


View Warnings Summary


Test (17  passed, 12 failed, 0 not run)
 
View Tests Summary