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----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in D:/Projects/CIP-build/CIPPython-install/python.exe and flags  /DWIN32 /D_WINDOWS /W3 /GR /EHsc  /bigobj  /bigobj
-- Configuring done
-- Generating done
-- Build files have been written to: D:/Projects/CIP-build/CIP-build

7>1>  File "D:\Projects\CIP-build\CIPPython-install\lib\site-packages\Cython\Compiler\Builtin.py", line 16, in <module>
7>1>    iter_next_utility_code = UtilityCode.load("IterNext", "ObjectHandling.c")
7>1>  File "Cython\Compiler\Code.py", line 253, in Cython.Compiler.Code.UtilityCodeBase.load (C:\Minonda\conda-bld\work\Cython-0.24.1\Cython\Compiler\Code.c:8585)
7>1>    internal newlines.  The line is appended to a buffer and the
7>1>  File "Cython\Compiler\Code.py", line 177, in Cython.Compiler.Code.UtilityCodeBase.load_utilities_from_file (C:\Minonda\conda-bld\work\Cython-0.24.1\Cython\Compiler\Code.c:6470)
7>1>    This class builds on InteractiveInterpreter and adds prompting
7>1>  File "D:\Projects\CIP-build\CIPPython-install\lib\site-packages\Cython\Utils.py", line 305, in open_source_file
7>1>    stream = io.open(source_filename, mode=mode,
7>2>Compiling...
7>1>AttributeError: 'module' object has no attribute 'open'

7>1>Project : error PRJ0019: A tool returned an error code from 

7>1>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\cip_python\CIP_PYTHON.dir\Release\BuildLog.htm"
7>1>CIP_PYTHON - 1 error(s), 0 warning(s)
7>2>GenerateModel.cxx
7>3>------ Build started: Project: GenerateParenchymaPhenotypesLib, Configuration: Release x64 ------
7>3>Generating GenerateParenchymaPhenotypesCLP.h
7>3>GenerateCLP --InputXML /.../CIP/CommandLineTools/GenerateParenchymaPhenotypes/GenerateParenchymaPhenotypes.xml --OutputCxx /.../CIP-build/CIP-build/CommandLineTools/GenerateParenchymaPhenotypes/GenerateParenchymaPhenotypesCLP.h
7>3>GenerateCLP: Found 2 parameters groups
7>3>GenerateCLP: Group "IO" has 5 parameters
7>3>GenerateCLP: Group "Options" has 2 parameters
7>3>Compiling...

7>6>Embedding manifest...
7>6>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\CommandLineTools\GenerateModel\GenerateModelTest.dir\Release\BuildLog.htm"
7>6>GenerateModelTest - 0 error(s), 0 warning(s)
7>8>------ Build started: Project: copy-external-files, Configuration: Release x64 ------
7>9>------ Build started: Project: copy-input-files, Configuration: Release x64 ------
7>8>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\copy-external-files.dir\Release\BuildLog.htm"
7>8>copy-external-files - 0 error(s), 0 warning(s)
7>9>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\copy-input-files.dir\Release\BuildLog.htm"
7>9>copy-input-files - 0 error(s), 0 warning(s)
7>========== Build: 8 succeeded, 1 failed, 216 up-to-date, 0 skipped ==========

7>Project : error PRJ0019: A tool returned an error code from "Performing build step for 'CIP'"

7>Build log was saved at "file://d:\Projects\CIP-build\CIP.dir\Release\BuildLog.htm"
7>CIP - 2 error(s), 1 warning(s)
========== Build: 6 succeeded, 1 failed, 3 up-to-date, 0 skipped ==========

7>3>GenerateParenchymaPhenotypes.cxx

7>3>..\..\..\..\CIP\CommandLineTools\GenerateParenchymaPhenotypes\GenerateParenchymaPhenotypes.cxx(554) : warning C4101: 'ok' : unreferenced local variable

7>2>Creating library...
7>2>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\CommandLineTools\GenerateModel\GenerateModelLib.dir\Release\BuildLog.htm"
7>2>GenerateModelLib - 0 error(s), 0 warning(s)
7>3>Creating library...
7>3>Build log was saved at "file://d:\Projects\CIP-build\CIP-build\CommandLineTools\GenerateParenchymaPhenotypes\GenerateParenchymaPhenotypesLib.dir\Release\BuildLog.htm"
7>3>GenerateParenchymaPhenotypesLib - 0 error(s), 1 warning(s)
7>4>------ Build started: Project: GenerateParenchymaPhenotypesTest, Configuration: Release x64 ------
7>5>------ Build started: Project: GenerateParenchymaPhenotypes, Configuration: Release x64 ------
7>5>Compiling...
7>4>Compiling...

*** WARNING non-zero return value in ctest from: C:\Program Files (x86)\CMake\bin\cmake.exe

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