Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160723-0400-Nightly (related builds)
Time: 2016-07-23T00:02:36 EDT
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-07-23T00:02:18 EDT
End Time: 2016-07-23T00:02:19 EDT
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 17

Configure (0 errors, 0 warnings)

Start Time: 2016-07-23T00:02:20 EDT
End Time: 2016-07-23T00:02:32 EDT
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python and flags   -fPIC  -Wno-array-bounds -msse2 
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 2 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-07-23T00:02:36 EDT
End Time: 2016-07-23T00:04:36 EDT

View Errors Summary


Build Warnings (2)
# All requested packages already installed.
# packages in environment at /.../CIP-build/CIPPython-install:
#
nose                      1.3.7                    py27_1  
[ 73%] Performing installpynrrd step for 'CIPPython'
[ 74%] Performing installpydicom step for 'CIPPython'
[ 75%] Completed 'CIPPython'
[ 79%] Built target CIPPython
[ 80%] Performing update step for 'teem'
[ 81%] Performing configure step for 'teem'

Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)Warning: somethings is wrong with binstar_client (No module named binstar_client.utils)loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake

-- Configuring done
-- Generating done
-- Build files have been written to: /.../CIP-build/teem-build
[ 82%] Performing build step for 'teem'
[ 94%] Built target teem
[ 94%] Built target airSanity
[ 94%] Built target cubic
[ 94%] Built target deconv
[ 95%] Built target emap
[ 95%] Built target gkms
[ 15%] Built target CIPCommon
[ 15%] Built target ChestConventions
[ 16%] Built target CIPIO
running build_ext
cythoning /.../CIP-build/CIP-build/cip_python/wrap_ChestConventions.pyx to /.../CIP-build/CIP-build/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
creating build/temp.linux-x86_64-2.7/.../CIP-build
creating build/temp.linux-x86_64-2.7/.../CIP-build/CIP-build
creating build/temp.linux-x86_64-2.7/.../CIP-build/CIP-build/cip_python
/usr/bin/cc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/.../CIP/Common/ -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP-build/CIP-build/cip_python/wrap_ChestConventions.cpp -o build/temp.linux-x86_64-2.7/.../CIP-build/CIP-build/cip_python/wrap_ChestConventions.o

cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]

/usr/bin/c++ -pthread -shared -L/.../CIP-build/CIPPython-install/lib -Wl,-rpath=/.../CIP-build/CIPPython-install/lib,--no-as-needed build/temp.linux-x86_64-2.7/.../CIP-build/CIP-build/cip_python/wrap_ChestConventions.o -L/.../CIP-build/lib -L/.../CIP-build/CIPPython-install/lib -lChestConventions -lpython2.7 -o /.../CIP-build/CIP-build/cip_python/ChestConventions.so
[ 16%] Built target CIP_PYTHON
[ 16%] Built target cipHelperTEST
[ 17%] Built target cipLobeSurfaceModelTEST
[ 17%] Built target cipNelderMeadSimplexOptimizerTEST
[ 17%] Built target itkCIPExtractChestLabelMapImageFilterTEST
[ 18%] Built target itkCIPMergeChestLabelMapsImageFilterTEST
[ 19%] Built target cipChestRegionChestTypeLocationsIOTEST
[ 19%] Built target cipLobeSurfaceModelIOTEST
[ 19%] Built target ConvertDicomLib

View Warnings Summary


Test (68  passed, 6 failed, 0 not run)
 
View Tests Summary