CDash : CIP

Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20160314-0400-Nightly (related builds)
Time: 2016-03-14T23:00:50 EDT
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F1603
CTest version: ctest-3.5.0-rc1

Current Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	15
Test	61	0

Previous Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	0	3
Test	61	0

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-03-14T23:00:22 EDT
End Time: 2016-03-14T23:00:22 EDT
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 4

Configure (0 errors, 0 warnings)

Start Time: 2016-03-14T23:00:23 EDT
End Time: 2016-03-14T23:00:47 EDT
Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output:

----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
SYSTEM_XML: 
Before find_package: /Users/acil-user/anaconda/include/libxml2
After find_package: /Users/acil-user/anaconda/include/libxml2
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
ChestConventions will not be wrapped. Enable USE_CYTHON to wrap it
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 15 warnings)

Build command: /Applications/CMake.app/Contents/bin/cmake --build . --config "Release" -- -i
Start Time: 2016-03-14T23:00:50 EDT
End Time: 2016-03-14T23:04:38 EDT

View Errors Summary

Build Warnings (15)

[ 99%] Linking CXX shared library ../../lib/libvtkViewsContext2D-6.3.dylib
[ 99%] Built target vtkViewsContext2D
[ 99%] Linking CXX shared library ../../lib/libvtkViewsInfovis-6.3.dylib
[100%] Built target vtkViewsInfovis
[ 45%] No install step for 'VTKv6'
[ 46%] Completed 'VTKv6'
[ 50%] Built target VTKv6
[ 51%] Performing update step for 'teem'
[ 52%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache-Release.cmake

CMake Warning (dev) at CMakeLists.txt:555 (install):

  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the

  cmake-packages(7) manual for more.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

[100%] Built target ITKVtkGlue
[100%] Built target ITKVtkGlue-all
[ 74%] No install step for 'ITKv4'
[ 75%] Completed 'ITKv4'
[ 79%] Built target ITKv4
[ 80%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache-Release.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 1454

File: cip_python/wrap_ChestConventions.cpp Line: 5344

cythoning /.../CIP/cip_python/wrap_ChestConventions.pyx to /.../CIP/cip_python/wrap_ChestConventions.cpp
building 'ChestConventions' extension
creating build
creating build/temp.macosx-10.5-x86_64-2.7
creating build/temp.macosx-10.5-x86_64-2.7/Users
creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user
creating build/temp.macosx-10.5-x86_64-2.7/Users/acil-user/Projects
creating build/temp.macosx-10.5-x86_64-2.7/.../CIP
creating build/temp.macosx-10.5-x86_64-2.7/.../CIP/cip_python
/usr/bin/cc -fno-strict-aliasing -I/.../CIP-build/CIPPython-install/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/.../CIP/Common/ -I/.../CIP-build/CIPPython-install/include/python2.7 -c /.../CIP/cip_python/wrap_ChestConventions.cpp -o build/temp.macosx-10.5-x86_64-2.7/.../CIP/cip_python/wrap_ChestConventions.o

/.../CIP/cip_python/wrap_ChestConventions.cpp:5344:28: warning: unused function '__Pyx_PyObject_AsString' [-Wunused-function]

static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^

Build Log line 1457

File: cip_python/wrap_ChestConventions.cpp Line: 5341

/.../CIP/cip_python/wrap_ChestConventions.cpp:5341:32: warning: unused function '__Pyx_PyUnicode_FromString' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
                               ^

Build Log line 1460

File: cip_python/wrap_ChestConventions.cpp Line: 341

/.../CIP/cip_python/wrap_ChestConventions.cpp:341:29: warning: unused function '__Pyx_Py_UNICODE_strlen' [-Wunused-function]

static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
                            ^

Build Log line 1463

File: cip_python/wrap_ChestConventions.cpp Line: 5456

/.../CIP/cip_python/wrap_ChestConventions.cpp:5456:33: warning: unused function '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]

static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^

Build Log line 1466

File: cip_python/wrap_ChestConventions.cpp Line: 5518

/.../CIP/cip_python/wrap_ChestConventions.cpp:5518:33: warning: unused function '__Pyx_PyInt_FromSize_t' [-Wunused-function]

static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^

Build Log line 1469

File: cip_python/wrap_ChestConventions.cpp Line: 4902

/.../CIP/cip_python/wrap_ChestConventions.cpp:4902:32: warning: unused function '__Pyx_PyInt_From_long' [-Wunused-function]

static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
                               ^

Build Log line 1472

File: cip_python/wrap_ChestConventions.cpp Line: 4928

/.../CIP/cip_python/wrap_ChestConventions.cpp:4928:27: warning: function '__Pyx_PyInt_As_long' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^

Build Log line 1475

File: cip_python/wrap_ChestConventions.cpp Line: 5112

/.../CIP/cip_python/wrap_ChestConventions.cpp:5112:26: warning: function '__Pyx_PyInt_As_int' is not needed and will not be emitted [-Wunneeded-internal-declaration]

static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
                         ^

Build Log line 1478

File: cip_python/wrap_ChestConventions.cpp Line: 3356

/.../CIP/cip_python/wrap_ChestConventions.cpp:3356:32: warning: unused function '__pyx_convert_PyObject_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyObject_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1481

File: cip_python/wrap_ChestConventions.cpp Line: 3406

/.../CIP/cip_python/wrap_ChestConventions.cpp:3406:32: warning: unused function '__pyx_convert_PyUnicode_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyUnicode_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1484

File: cip_python/wrap_ChestConventions.cpp Line: 3456

/.../CIP/cip_python/wrap_ChestConventions.cpp:3456:32: warning: unused function '__pyx_convert_PyStr_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyStr_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^

Build Log line 1487

File: cip_python/wrap_ChestConventions.cpp Line: 3556

/.../CIP/cip_python/wrap_ChestConventions.cpp:3556:32: warning: unused function '__pyx_convert_PyByteArray_string_to_py_std__in_string' [-Wunused-function]

static CYTHON_INLINE PyObject *__pyx_convert_PyByteArray_string_to_py_std__in_string(std::string const &__pyx_v_s) {
                               ^
12 warnings generated.
/usr/bin/c++ -bundle -undefined dynamic_lookup -L/.../CIP-build/CIPPython-install/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/.../CIP/cip_python/wrap_ChestConventions.o -L/.../CIP-build/lib -L/.../CIP-build/CIPPython-install/lib -lChestConventions -o /.../CIP-build/CIP-build/cip_python/ChestConventions.so
[ 10%] Built target CIP_PYTHON
[ 10%] Linking CXX executable cipLobeSurfaceModelTEST
[ 10%] Built target cipLobeSurfaceModelTEST
[ 10%] Linking CXX executable cipNelderMeadSimplexOptimizerTEST
[ 11%] Built target cipNelderMeadSimplexOptimizerTEST
[ 11%] Linking CXX executable itkCIPExtractChestLabelMapImageFilterTEST

View Warnings Summary

Test (13 passed, 61 failed, 0 not run)

View Tests Summary