Site Name: Linux1.Amazon.ACIL
Build Name: CIP-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160302-0400-Nightly (related builds)
Time: 2016-03-02T00:31:25 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Configure (0 errors, 0 warnings)

Start Time: 2016-03-02T00:30:58 EST
End Time: 2016-03-02T00:31:22 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /home/ec2-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-03-02T00:31:25 EST
End Time: 2016-03-02T01:22:19 EST

        vtkIOCore
        vtkIOGeometry
        vtkIOImage
        vtkMetaIO
        vtkfreetype
        vtkgl2ps
        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff

CMake Error at CMake/vtkModuleMacros.cmake:355 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Infovis/Layout/CMakeLists.txt:57 (vtk_module_library)



CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Interaction/Style/CMakeLists.txt:38 (vtk_module_library)



CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Imaging/Color/CMakeLists.txt:12 (vtk_module_library)



CMake Error at CMake/vtkModuleAPI.cmake:53 (message):

  No such module: "vtkImagingColor"
Call Stack (most recent call first):
  CMake/vtkModuleAPI.cmake:15 (vtk_module_load)
  CMake/vtkModuleAPI.cmake:132 (_vtk_module_config_recurse)
  CMake/vtkModuleMacros.cmake:159 (vtk_module_config)
  CMake/vtkModuleMacros.cmake:555 (vtk_module_impl)
  Rendering/Annotation/CMakeLists.txt:36 (vtk_module_library)


-- Configuring incomplete, errors occurred!
        vtkIOCore
        vtkIOGeometry
        vtkIOImage
        vtkMetaIO
        vtkfreetype
        vtkgl2ps
        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff

CMake Error at CMake/vtkModuleMacros.cmake:355 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Imaging/Hybrid/CMakeLists.txt:18 (vtk_module_library)



CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Infovis/Layout/CMakeLists.txt:57 (vtk_module_library)



CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Interaction/Style/CMakeLists.txt:38 (vtk_module_library)



CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Imaging/Color/CMakeLists.txt:12 (vtk_module_library)



CMake Error at CMake/vtkModuleAPI.cmake:53 (message):

  No such module: "vtkImagingColor"
Call Stack (most recent call first):
  CMake/vtkModuleAPI.cmake:15 (vtk_module_load)
  CMake/vtkModuleAPI.cmake:132 (_vtk_module_config_recurse)
  CMake/vtkModuleMacros.cmake:159 (vtk_module_config)
  CMake/vtkModuleMacros.cmake:555 (vtk_module_impl)
  Rendering/Annotation/CMakeLists.txt:36 (vtk_module_library)


-- Configuring incomplete, errors occurred!
Build Log line 1784


  File: teem/src/echo/renderEcho.c
  Line: 499 
Building C object CMakeFiles/teem.dir/src/echo/methodsEcho.c.o
Could not read from progress file.
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Building C object CMakeFiles/teem.dir/src/echo/objmethods.c.o
/tmp/ccHNyskT.s: Assembler messages:
/tmp/ccHNyskT.s: Fatal error: can't write CMakeFiles/teem.dir/src/echo/objmethods.c.o: No space left on device
/tmp/ccHNyskT.s: Fatal error: can't close CMakeFiles/teem.dir/src/echo/objmethods.c.o: No space left on device
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/echo/renderEcho.c.o

/.../CIP-build/teem/src/echo/renderEcho.c:499:1: fatal error: error writing to /tmp/cckKva5Y.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/echo/set.c.o
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Building C object CMakeFiles/teem.dir/src/echo/sqd.c.o

Build Log line 1792


  File: teem/src/echo/sqd.c
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/.../CIP-build/teem/src/echo/sqd.c:401:1: fatal error: error writing to /tmp/cc1LE6RB.s: No space left on device

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 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/hoover/defaultsHoover.c.o
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Building C object CMakeFiles/teem.dir/src/hoover/rays.c.o

Build Log line 1802


  File: teem/src/hoover/rays.c
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/.../CIP-build/teem/src/hoover/rays.c:494:1: fatal error: error closing /tmp/ccqRdaXV.s: No space left on device

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compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/hoover/stub.c.o
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Building C object CMakeFiles/teem.dir/src/seek/descend.c.o

Build Log line 1810


  File: teem/src/seek/descend.c
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/.../CIP-build/teem/src/seek/descend.c:791:1: fatal error: error writing to /tmp/ccG3zN5m.s: No space left on device

 }
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compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/seek/enumsSeek.c.o
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Building C object CMakeFiles/teem.dir/src/seek/extract.c.o

Build Log line 1818


  File: teem/src/seek/extract.c
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/.../CIP-build/teem/src/seek/extract.c:1002:1: fatal error: error writing to /tmp/ccoFjI0o.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/seek/methodsSeek.c.o
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Building C object CMakeFiles/teem.dir/src/seek/setSeek.c.o
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Building C object CMakeFiles/teem.dir/src/seek/tables.c.o
Build Log line 1831


  File: teem/src/seek/textract.c
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Building C object CMakeFiles/teem.dir/src/seek/textract.c.o

/.../CIP-build/teem/src/seek/textract.c:1917:1: fatal error: error writing to /tmp/ccbSX26h.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/seek/updateSeek.c.o
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Building C object CMakeFiles/teem.dir/src/ten/aniso.c.o
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Building C object CMakeFiles/teem.dir/src/ten/bimod.c.o
Build Log line 1852


  File: teem/src/ten/epireg.c
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Building C object CMakeFiles/teem.dir/src/ten/bvec.c.o
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Building C object CMakeFiles/teem.dir/src/ten/chan.c.o
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Building C object CMakeFiles/teem.dir/src/ten/defaultsTen.c.o
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Building C object CMakeFiles/teem.dir/src/ten/enumsTen.c.o
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Building C object CMakeFiles/teem.dir/src/ten/epireg.c.o

/.../CIP-build/teem/src/ten/epireg.c:1345:1: fatal error: error writing to /tmp/ccYdo4y8.s: No space left on device

 }
 ^
compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/ten/estimate.c.o

Build Log line 1858


  File: teem/src/ten/estimate.c
  Line: 2091 
/.../CIP-build/teem/src/ten/estimate.c:2091:1: fatal error: error writing to /tmp/ccqt4atc.s: No space left on device

 }
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compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/ten/fiber.c.o
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Building C object CMakeFiles/teem.dir/src/ten/fiberMethods.c.o
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Building C object CMakeFiles/teem.dir/src/ten/glyph.c.o
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Build Log line 1884


  File: teem/src/ten/tenGage.c
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Building C object CMakeFiles/teem.dir/src/ten/path.c.o
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Building C object CMakeFiles/teem.dir/src/ten/qglox.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tenDwiGage.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tenGage.c.o

/.../CIP-build/teem/src/ten/tenGage.c:2127:1: fatal error: error writing to /tmp/ccsn5oJA.s: No space left on device

 tenGageKind = &_tenGageKind;
 ^
compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/ten/tendAbout.c.o
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Build Log line 1972


  File: teem/src/ten/tensor.c
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Building C object CMakeFiles/teem.dir/src/ten/tendSten.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tendTriple.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tendUnmf.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tensor.c.o

/.../CIP-build/teem/src/ten/tensor.c:1083:1: fatal error: error writing to /tmp/ccGVExya.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/ten/triple.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tenModel.c.o
/tmp/ccnUHNgP.s: Assembler messages:
Build Log line 2059


  File: teem/src/pull/trace.c
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/tmp/ccqH4Ay7.s: Fatal error: can't close CMakeFiles/teem.dir/src/pull/popcntl.c.o: No space left on device
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Building C object CMakeFiles/teem.dir/src/pull/ccPull.c.o
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Building C object CMakeFiles/teem.dir/src/pull/enumsPull.c.o
/tmp/ccYadYPh.s: Assembler messages:
/tmp/ccYadYPh.s: Fatal error: can't write CMakeFiles/teem.dir/src/pull/enumsPull.c.o: No space left on device
/tmp/ccYadYPh.s: Fatal error: can't close CMakeFiles/teem.dir/src/pull/enumsPull.c.o: No space left on device
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/pull/trace.c.o

/.../CIP-build/teem/src/pull/trace.c:829:1: fatal error: error writing to /tmp/ccskP47i.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/coil/coreCoil.c.o

Build Log line 2065


  File: teem/src/coil/coreCoil.c
  Line: 449 
/.../CIP-build/teem/src/coil/coreCoil.c:449:1: fatal error: error writing to /tmp/cchKDns9.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/coil/defaultsCoil.c.o
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Building C object CMakeFiles/teem.dir/src/coil/enumsCoil.c.o
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  File: teem/src/push/setup.c
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Building C object CMakeFiles/teem.dir/src/push/forces.c.o
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Building C object CMakeFiles/teem.dir/src/push/setup.c.o

/.../CIP-build/teem/src/push/setup.c:475:1: fatal error: error writing to /tmp/cciohua5.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/defaultsMite.c.o
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Building C object CMakeFiles/teem.dir/src/mite/kindnot.c.o
/tmp/ccHVNq7z.s: Assembler messages:
/tmp/ccHVNq7z.s: Fatal error: can't write CMakeFiles/teem.dir/src/mite/kindnot.c.o: No space left on device
/tmp/ccHVNq7z.s: Fatal error: can't close CMakeFiles/teem.dir/src/mite/kindnot.c.o: No space left on device
Build Log line 2108


  File: teem/src/mite/ray.c
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/.../CIP-build/teem/src/mite/ray.c:337:1: fatal error: error writing to /tmp/ccMe9pNE.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/renderMite.c.o

Build Log line 2114


  File: teem/src/mite/renderMite.c
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/.../CIP-build/teem/src/mite/renderMite.c:188:1: fatal error: error writing to /tmp/ccmxzUe9.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/shade.c.o
/tmp/ccnGDeEk.s: Assembler messages:
/tmp/ccnGDeEk.s: Fatal error: can't close CMakeFiles/teem.dir/src/mite/shade.c.o: No space left on device
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Building C object CMakeFiles/teem.dir/src/mite/thread.c.o
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  File: teem/src/mite/txf.c
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Building C object CMakeFiles/teem.dir/src/mite/txf.c.o

/.../CIP-build/teem/src/mite/txf.c:694:1: fatal error: error writing to /tmp/cc8TVdvv.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/user.c.o

Build Log line 2132


  File: teem/src/mite/user.c
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/.../CIP-build/teem/src/mite/user.c:219:1: fatal error: error writing to /tmp/ccZkdtnb.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/meet/enumall.c.o

Build Log line 2138


  File: teem/src/meet/enumall.c
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/.../CIP-build/teem/src/meet/enumall.c:281:1: fatal error: error writing to /tmp/ccgTM52z.s: No space left on device

 };
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/meet/meetNrrd.c.o

Build Log line 2144


  File: teem/src/meet/meetNrrd.c
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/.../CIP-build/teem/src/meet/meetNrrd.c:398:1: fatal error: error writing to /tmp/ccmOEpYg.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/meet/meetGage.c.o
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Building C object CMakeFiles/teem.dir/src/meet/meetPull.c.o

Build Log line 2153


  File: teem/src/meet/meetPull.c
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/.../CIP-build/teem/src/meet/meetPull.c:827:1: fatal error: error writing to /tmp/cctV7HEE.s: No space left on device

 }
 ^
compilation terminated.
Linking C shared library bin/libteem.so

cc: error: CMakeFiles/teem.dir/src/echo/objmethods.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/echo/renderEcho.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/echo/sqd.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/hoover/rays.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/descend.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/extract.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/textract.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/epireg.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/estimate.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/tenGage.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/tensor.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/tenModel.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/pointPull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/popcntl.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/enumsPull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/trace.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/coil/coreCoil.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/push/setup.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/mite/kindnot.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/mite/ray.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/mite/renderMite.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/mite/shade.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/txf.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/user.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/meet/enumall.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/meet/meetNrrd.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/meet/meetPull.c.o: No such file or directory
Could not read from progress file.
Built target teem
Scanning dependencies of target airSanity
Could not read from progress file.
The maximum number of reported warnings or errors has been reached!!!

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Build Warnings (0)

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Test (0  passed, 0 failed, 0 not run)
 
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