CDash : CIP

Site Name: Linux1.Amazon.ACIL
Build Name: CIP-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160224-0400-Nightly (related builds)
Time: 2016-02-24T00:11:39 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

Current Build
Stage	Errors	Warnings
Update
Configure	0	0
Build	50	0
Test	3	0

Previous Build
Stage	Errors	Warnings
Update	0	0
Configure	0	0
Build	50	0
Test	3	0

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Configure (0 errors, 0 warnings)

Start Time: 2016-02-24T00:11:08 EST
End Time: 2016-02-24T00:11:38 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP"
Configure Return Value: 0
Configure Output:

----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /home/ec2-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /home/ec2-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (50 errors, 0 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-24T00:11:39 EST
End Time: 2016-02-24T00:16:33 EST

        vtkIOCore
        vtkIOGeometry
        vtkIOImage
        vtkMetaIO
        vtkfreetype
        vtkgl2ps
        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff

CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Rendering/Annotation/CMakeLists.txt:36 (vtk_module_library)

CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Rendering/Volume/CMakeLists.txt:73 (vtk_module_library)

CMake Error at CMake/vtkModuleAPI.cmake:53 (message):

  No such module: "vtkRenderingAnnotation"
Call Stack (most recent call first):
  CMake/vtkModuleAPI.cmake:15 (vtk_module_load)
  CMake/vtkModuleAPI.cmake:132 (_vtk_module_config_recurse)
  CMake/vtkModuleMacros.cmake:159 (vtk_module_config)
  CMake/vtkModuleMacros.cmake:555 (vtk_module_impl)
  Interaction/Widgets/CMakeLists.txt:161 (vtk_module_library)


-- Configuring incomplete, errors occurred!

        vtkIOCore
        vtkIOGeometry
        vtkIOImage
        vtkMetaIO
        vtkfreetype
        vtkgl2ps
        vtkhdf5
        vtklibxml2
        vtkpng
        vtktiff

CMake Error at CMake/vtkModuleMacros.cmake:282 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMake/vtkModuleMacros.cmake:318 (vtk_module_export_info)
  CMake/vtkModuleMacros.cmake:748 (vtk_module_export)
  Imaging/Color/CMakeLists.txt:12 (vtk_module_library)

CMake Error at CMake/vtkModuleAPI.cmake:53 (message):

  No such module: "vtkImagingColor"
Call Stack (most recent call first):
  CMake/vtkModuleAPI.cmake:15 (vtk_module_load)
  CMake/vtkModuleAPI.cmake:132 (_vtk_module_config_recurse)
  CMake/vtkModuleMacros.cmake:159 (vtk_module_config)
  CMake/vtkModuleMacros.cmake:555 (vtk_module_impl)
  Rendering/Annotation/CMakeLists.txt:36 (vtk_module_library)


-- Configuring incomplete, errors occurred!

Build Log line 1755

File: teem/src/echo/sqd.c Line: 401

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Building C object CMakeFiles/teem.dir/src/echo/model.c.o
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Building C object CMakeFiles/teem.dir/src/echo/sqd.c.o

/.../CIP-build/teem/src/echo/sqd.c:401:1: fatal error: error writing to /tmp/ccxpv3I3.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/hoover/defaultsHoover.c.o
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Building C object CMakeFiles/teem.dir/src/hoover/methodsHoover.c.o

Build Log line 1763

File: teem/src/hoover/methodsHoover.c Line: 176

/.../CIP-build/teem/src/hoover/methodsHoover.c:176:1: fatal error: error writing to /tmp/cctHjokD.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/hoover/rays.c.o

Build Log line 1769

File: teem/src/hoover/rays.c Line: 494

/.../CIP-build/teem/src/hoover/rays.c:494:1: fatal error: error writing to /tmp/ccm7CiP1.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/hoover/stub.c.o
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Building C object CMakeFiles/teem.dir/src/seek/descend.c.o

Build Log line 1778

File: teem/src/seek/descend.c Line: 791

/.../CIP-build/teem/src/seek/descend.c:791:1: fatal error: error writing to /tmp/ccQ9KKap.s: No space left on device

 }
 ^
compilation terminated.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/seek/enumsSeek.c.o
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Building C object CMakeFiles/teem.dir/src/seek/extract.c.o

Build Log line 1786

File: teem/src/seek/extract.c Line: 1002

/.../CIP-build/teem/src/seek/extract.c:1002:1: fatal error: error writing to /tmp/cca0TUj0.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/seek/methodsSeek.c.o
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Build Log line 1798

File: teem/src/seek/textract.c Line: 1917

Building C object CMakeFiles/teem.dir/src/seek/textract.c.o

/.../CIP-build/teem/src/seek/textract.c:1917:1: fatal error: error writing to /tmp/ccRJ7Ber.s: No space left on device

 }
 ^
compilation terminated.
The bug is not reproducible, so it is likely a hardware or OS problem.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/seek/updateSeek.c.o
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Building C object CMakeFiles/teem.dir/src/ten/bimod.c.o

Build Log line 1835

File: teem/src/ten/path.c Line: 1074

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Building C object CMakeFiles/teem.dir/src/ten/path.c.o

/.../CIP-build/teem/src/ten/path.c:1074:1: fatal error: error writing to /tmp/ccsJBKPN.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/ten/qglox.c.o

Build Log line 1841

File: teem/src/ten/qglox.c Line: 545

/.../CIP-build/teem/src/ten/qglox.c:545:1: fatal error: error writing to /tmp/cce86F9g.s: No space left on device

 }
 ^
compilation terminated.
Preprocessed source stored into /tmp/ccKekMvG.out file, please attach this to your bugreport.
Could not read from progress file.
Building C object CMakeFiles/teem.dir/src/ten/qseg.c.o
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Building C object CMakeFiles/teem.dir/src/ten/tenGage.c.o

Build Log line 1852

File: teem/src/ten/tenGage.c Line: 2127

/.../CIP-build/teem/src/ten/tenGage.c:2127:1: fatal error: error writing to /tmp/cceHrbml.s: No space left on device

 tenGageKind = &_tenGageKind;
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/ten/tendAbout.c.o
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Build Log line 1940

File: teem/src/ten/tensor.c Line: 1083

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Building C object CMakeFiles/teem.dir/src/ten/tensor.c.o

/.../CIP-build/teem/src/ten/tensor.c:1083:1: fatal error: error writing to /tmp/cceIK2sT.s: No space left on device

 }
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compilation terminated.
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Building C object CMakeFiles/teem.dir/src/ten/triple.c.o
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Build Log line 2012

File: teem/src/pull/energy.c Line: 838

Building C object CMakeFiles/teem.dir/src/pull/initPull.c.o
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Building C object CMakeFiles/teem.dir/src/pull/corePull.c.o
/tmp/ccWX6h6N.s: Assembler messages:
/tmp/ccWX6h6N.s: Fatal error: can't write CMakeFiles/teem.dir/src/pull/corePull.c.o: No space left on device
/tmp/ccWX6h6N.s: Fatal error: can't close CMakeFiles/teem.dir/src/pull/corePull.c.o: No space left on device
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Building C object CMakeFiles/teem.dir/src/pull/defaultsPull.c.o
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Building C object CMakeFiles/teem.dir/src/pull/energy.c.o

/.../CIP-build/teem/src/pull/energy.c:838:1: fatal error: error writing to /tmp/ccn9Z1tY.s: No space left on device

 pullHestEnergySpec = &_pullHestEnergySpec;
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/pull/infoPull.c.o

Build Log line 2018

File: teem/src/pull/infoPull.c Line: 484

/.../CIP-build/teem/src/pull/infoPull.c:484:1: fatal error: error writing to /tmp/ccTQcaUz.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/pull/pointPull.c.o
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Build Log line 2053

File: teem/src/coil/scalarCoil.c Line: 360

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Building C object CMakeFiles/teem.dir/src/coil/methodsCoil.c.o
/tmp/ccKAVR7w.s: Assembler messages:
/tmp/ccKAVR7w.s: Fatal error: can't close CMakeFiles/teem.dir/src/coil/methodsCoil.c.o: No space left on device
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Building C object CMakeFiles/teem.dir/src/coil/realmethods.c.o
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Building C object CMakeFiles/teem.dir/src/coil/scalarCoil.c.o

/.../CIP-build/teem/src/coil/scalarCoil.c:360:1: fatal error: error writing to /tmp/ccR1bxxH.s: No space left on device

 };
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/coil/tensorCoil.c.o

Build Log line 2059

File: teem/src/coil/tensorCoil.c Line: 290

/.../CIP-build/teem/src/coil/tensorCoil.c:290:1: fatal error: error writing to /tmp/ccuca898.s: No space left on device

 coilKind7Tensor = &_coilKind7Tensor;
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/push/action.c.o

Build Log line 2065

File: teem/src/push/action.c Line: 387

/.../CIP-build/teem/src/push/action.c:387:1: fatal error: error writing to /tmp/cc5m4vp4.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/push/binning.c.o
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Building C object CMakeFiles/teem.dir/src/push/corePush.c.o

Build Log line 2073

File: teem/src/push/corePush.c Line: 456

/.../CIP-build/teem/src/push/corePush.c:456:1: fatal error: error closing /tmp/ccTbpCv7.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/push/defaultsPush.c.o
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Building C object CMakeFiles/teem.dir/src/push/forces.c.o

Build Log line 2081

File: teem/src/push/forces.c Line: 471

/.../CIP-build/teem/src/push/forces.c:471:1: fatal error: error writing to /tmp/cc6BNz6D.s: No space left on device

 pushHestEnergySpec = &_pushHestEnergySpec;
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/push/methodsPush.c.o
/tmp/cchiL46f.s: Assembler messages:
/tmp/cchiL46f.s: Fatal error: can't write CMakeFiles/teem.dir/src/push/methodsPush.c.o: No space left on device
/tmp/cchiL46f.s: Fatal error: can't close CMakeFiles/teem.dir/src/push/methodsPush.c.o: No space left on device
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Building C object CMakeFiles/teem.dir/src/push/setup.c.o

Build Log line 2092

File: teem/src/push/setup.c Line: 475

/.../CIP-build/teem/src/push/setup.c:475:1: fatal error: error writing to /tmp/cch5MNZk.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/defaultsMite.c.o
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Build Log line 2100

File: teem/src/mite/kindnot.c Line: 183

/.../CIP-build/teem/src/mite/kindnot.c:183:1: fatal error: error writing to /tmp/cc4XRuEZ.s: No space left on device

 miteValGageKind = &_miteValGageKind;
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/ray.c.o

Build Log line 2106

File: teem/src/mite/ray.c Line: 337

/.../CIP-build/teem/src/mite/ray.c:337:1: fatal error: error writing to /tmp/ccON2F2m.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/renderMite.c.o

Build Log line 2112

File: teem/src/mite/renderMite.c Line: 188

/.../CIP-build/teem/src/mite/renderMite.c:188:1: fatal error: error writing to /tmp/ccHd1erZ.s: No space left on device

 }
 ^
compilation terminated.
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Building C object CMakeFiles/teem.dir/src/mite/shade.c.o

Build Log line 2118

File: teem/src/mite/shade.c Line: 222

/.../CIP-build/teem/src/mite/shade.c:222:1: fatal error: error writing to /tmp/ccyVlRrE.s: No space left on device

 }
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compilation terminated.
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/tmp/ccsBM2Qc.s: Assembler messages:
/tmp/ccsBM2Qc.s: Fatal error: can't close CMakeFiles/teem.dir/src/meet/meetNrrd.c.o: No space left on device
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Linking C shared library bin/libteem.so

cc: error: CMakeFiles/teem.dir/src/echo/sqd.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/hoover/methodsHoover.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/hoover/rays.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/descend.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/extract.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/seek/textract.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/path.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/qglox.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/tenGage.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/ten/tensor.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/actionPull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/constraints.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/contextPull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/corePull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/energy.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/infoPull.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/pull/trace.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/coil/methodsCoil.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/coil/scalarCoil.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/coil/tensorCoil.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/push/action.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/push/corePush.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/push/forces.c.o: No such file or directory

cc: error: CMakeFiles/teem.dir/src/push/methodsPush.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/push/setup.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/kindnot.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/ray.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/renderMite.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/mite/shade.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/meet/meetNrrd.c.o: No such file or directory
cc: error: CMakeFiles/teem.dir/src/meet/meetPull.c.o: No such file or directory
Could not read from progress file.
Built target teem
The maximum number of reported warnings or errors has been reached!!!

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Build Warnings (0)

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Test (71 passed, 3 failed, 0 not run)

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