Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON (view notes)
Stamp: 20160210-0400-Nightly (related builds)
Time: 2016-02-09T23:03:09 EST
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F1134
CTest version: ctest-3.5.0-rc1

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-02-09T23:02:34 EST
End Time: 2016-02-09T23:02:37 EST
Update Command: "/Applications/GitHub.app/Contents/Resources/git/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2016-02-09T23:02:39 EST
End Time: 2016-02-09T23:03:09 EST
Configure Command: /Applications/CMake.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
-- The C compiler identification is AppleClang 6.0.0.6000057
-- The CXX compiler identification is AppleClang 6.0.0.6000057
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /Users/acil-user/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /Users/acil-user/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 7 warnings)

Build command: /Applications/CMake.app/Contents/bin/cmake --build . --config "Release" -- -i
Start Time: 2016-02-09T23:03:09 EST
End Time: 2016-02-09T23:37:51 EST

View Errors Summary


Build Warnings (7)
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done

CMake Warning (dev) at CMakeLists.txt:555 (install):
  Policy CMP0062 is not set: Disallow install() of export() result.  Run
  "cmake --help-policy CMP0062" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The file

    /.../CIP-build/teem-build/TeemLibraryDepends.cmake

  was generated by the export() command.  It should not be installed with the
  install() command.  Use the install(EXPORT) mechanism instead.  See the
  cmake-packages(7) manual for more.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring done
-- Generating done

CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 4756


  File: /Users/acil-user/Projects/CIP-build/libs/coroutine/src/detail/standard_stack_allocator_posix.cpp
  Line: 61 
darwin.archive bin.v2/libs/context/build/darwin-4.2.1/release/link-static/threading-multi/libboost_context.a
common.copy /.../CIP-build/Boost-install/lib/libboost_context.a
common.mkdir bin.v2/libs/coroutine
common.mkdir bin.v2/libs/coroutine/build
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi
common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/standard_stack_allocator_posix.o

libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:61:15: warning: unused variable 'result' [-Wunused-variable]
    const int result = ::getrlimit( RLIMIT_STACK, & limit);
              ^

Build Log line 4759


  File: /Users/acil-user/Projects/CIP-build/libs/coroutine/src/detail/standard_stack_allocator_posix.cpp
  Line: 135 
libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:135:15: warning: unused variable 'result' [-Wunused-variable]
    const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) );
              ^
2 warnings generated.
darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/detail/coroutine_context.o
darwin.archive bin.v2/libs/coroutine/build/darwin-4.2.1/release/link-static/threading-multi/libboost_coroutine.a
common.copy /.../CIP-build/Boost-install/lib/libboost_coroutine.a
common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release/link-static
common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi
darwin.compile.c++ bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi/error_code.o
darwin.archive bin.v2/libs/system/build/darwin-4.2.1/release/link-static/threading-multi/libboost_system.a
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done

CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.

Build Log line 7959


  File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx
  Line: 298 
Scanning dependencies of target SegmentLungLobesTest
[ 30%] Building CXX object CommandLineTools/SegmentLungLobes/CMakeFiles/SegmentLungLobesTest.dir/Testing/SegmentLungLobesTest.cxx.o
[ 30%] Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 30%] Built target SegmentLungLobesTest
[ 30%] Generating ReadDicomWriteTagsCLP.h
GenerateCLP --InputXML /.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.xml --OutputCxx /.../CIP-build/CIP-build/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTagsCLP.h
GenerateCLP: Found 1 parameters groups
GenerateCLP: Group "IO" has 4 parameters
Scanning dependencies of target ReadDicomWriteTagsLib
[ 30%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTagsLib.dir/ReadDicomWriteTags.cxx.o

/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:298:28: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( commaLocation != std::string::npos )
             ~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~

Build Log line 7962


  File: CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx
  Line: 304 
/.../CIP/CommandLineTools/ReadDicomWriteTags/ReadDicomWriteTags.cxx:304:30: warning: comparison of constant 18446744073709551615 with expression of type 'unsigned int' is always true [-Wtautological-constant-out-of-range-compare]
        if ( newlineLocation != std::string::npos )
             ~~~~~~~~~~~~~~~ ^  ~~~~~~~~~~~~~~~~~
2 warnings generated.
[ 30%] Linking CXX static library ../../bin/libReadDicomWriteTagsLib.a
[ 30%] Built target ReadDicomWriteTagsLib
Scanning dependencies of target ReadDicomWriteTags
[ 30%] Building CXX object CommandLineTools/ReadDicomWriteTags/CMakeFiles/ReadDicomWriteTags.dir/.../CIP-build/SlicerExecutionModel/CMake/SEMCommandLineLibraryWrapper.cxx.o
[ 31%] Linking CXX executable ../../bin/ReadDicomWriteTags
[ 31%] Built target ReadDicomWriteTags
Scanning dependencies of target ReadDicomWriteTagsTest

View Warnings Summary


Test (62  passed, 15 failed, 0 not run)
 
View Tests Summary