Site Name: Linux1.Amazon.ACIL
Build Name: CIP-master-Linux-3.14.35-28.38.amzn1.x86_64-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160206-0400-Nightly (related builds)
Time: 2016-02-06T00:22:33 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.14.35-28.38.amzn1.x86_64
OS Version: #1 SMP Wed Mar 11 22:50:37 UTC 2015
Compiler Version: unknown
CTest version: ctest-2.8.12

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Configure (0 errors, 0 warnings)

Start Time: 2016-02-06T00:22:05 EST
End Time: 2016-02-06T00:22:29 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP-master"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-master-build/CIP-build

View Configure Summary

Build (13 errors, 1 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-06T00:22:33 EST
End Time: 2016-02-06T00:29:09 EST

Build Log line 622


  File: OpenCV/modules/core/include/opencv2/core/ocl.hpp
  Line: 669 
[ 90%] Building CXX object modules/objdetect/CMakeFiles/opencv_objdetect.dir/opencl_kernels_objdetect.cpp.o
Linking CXX shared library ../../lib/libopencv_objdetect.so
[ 90%] Built target opencv_objdetect
Scanning dependencies of target opencv_photo_pch_dephelp
[ 90%] Building CXX object modules/photo/CMakeFiles/opencv_photo_pch_dephelp.dir/opencv_photo_pch_dephelp.cxx.o
Linking CXX static library ../../lib/libopencv_photo_pch_dephelp.a
[ 90%] Built target opencv_photo_pch_dephelp
Scanning dependencies of target pch_Generate_opencv_photo
[ 90%] Generating precomp.hpp.gch/opencv_photo_Release.gch
In file included from /.../CIP-master-build/OpenCV-build/modules/photo/precomp.hpp:49:0:

/.../CIP-master-build/OpenCV/modules/core/include/opencv2/core/ocl.hpp:669:2: fatal error: can’t write PCH file: No space left on device

 }}
  ^
compilation terminated.
[ 95%] Built target pch_Generate_opencv_photo
Scanning dependencies of target opencv_photo
[ 95%] Building CXX object modules/photo/CMakeFiles/opencv_photo.dir/src/merge.cpp.o
[ 95%] Building CXX object modules/photo/CMakeFiles/opencv_photo.dir/src/seamless_cloning_impl.cpp.o
[ 95%] Building CXX object modules/photo/CMakeFiles/opencv_photo.dir/src/tonemap.cpp.o
[ 95%] Building CXX object modules/photo/CMakeFiles/opencv_photo.dir/src/seamless_cloning.cpp.o
[ 95%] Building CXX object modules/photo/CMakeFiles/opencv_photo.dir/src/calibrate.cpp.o
Build Log line 674


  File: OpenCV/modules/core/include/opencv2/core/ocl.hpp
  Line: 669 
[ 90%] Built target opencv_features2d
[ 90%] Built target opencv_imgcodecs_pch_dephelp
[ 90%] Built target pch_Generate_opencv_imgcodecs
[ 90%] Built target opencv_imgcodecs
[ 90%] Built target opencv_objdetect_pch_dephelp
[ 90%] Built target pch_Generate_opencv_objdetect
[ 90%] Built target opencv_objdetect
[ 90%] Built target opencv_photo_pch_dephelp
[ 90%] Generating precomp.hpp.gch/opencv_photo_Release.gch
In file included from /.../CIP-master-build/OpenCV-build/modules/photo/precomp.hpp:49:0:

/.../CIP-master-build/OpenCV/modules/core/include/opencv2/core/ocl.hpp:669:2: fatal error: can’t write PCH file: No space left on device

 }}
  ^
compilation terminated.
[ 95%] Built target pch_Generate_opencv_photo
[100%] Built target opencv_photo
Install the project...
-- Install configuration: "Release"
-- Up-to-date: /.../CIP-master-build/OpenCV-install/share/OpenCV/3rdparty/lib/libippicv.a
-- Up-to-date: /.../CIP-master-build/OpenCV-install/include/opencv2/opencv_modules.hpp
-- Up-to-date: /.../CIP-master-build/OpenCV-install/lib/pkgconfig/opencv.pc
The following NEW packages will be INSTALLED:

    mkl:   11.3.1-0          

The following packages will be UPDATED:

    numpy: 1.10.2-py27_0      --> 1.10.4-py27_0     
    scipy: 0.16.1-np110py27_0 --> 0.17.0-np110py27_1


Error: Missing write permissions in: /.../CIP-master-build/CIPPython-install

#
# You don't appear to have the necessary permissions to install packages
# into the install area '/.../CIP-master-build/CIPPython-install'.
# However you can clone this environment into your home directory and
# then make changes to it.
# This may be done using the command:
#
# $ conda create -n my_root --clone=/.../CIP-master-build/CIPPython-install

[ 58%] Performing installvtk step for 'CIPPython'
[ 23%] Built target MergeParticleDataSetsTest
[ 23%] Built target RemoveParticlesFromParticlesDataSetLib
Linking CXX executable ../../bin/RemoveParticlesFromParticlesDataSet
[ 24%] Built target RemoveParticlesFromParticlesDataSet
Linking CXX executable ../Testing/bin/RemoveParticlesFromParticlesDataSetTest
[ 24%] Built target RemoveParticlesFromParticlesDataSetTest
[ 25%] Built target ExtractParticlesFromChestRegionChestTypeLib
Linking CXX executable ../../bin/ExtractParticlesFromChestRegionChestType
[ 25%] Built target ExtractParticlesFromChestRegionChestType
Linking CXX executable ../Testing/bin/ExtractParticlesFromChestRegionChestTypeTest

collect2: error: ld returned 1 exit status

[ 25%] Built target ExtractParticlesFromChestRegionChestTypeTest
[ 26%] Built target GenerateOtsuLungCastLib
Linking CXX executable ../../bin/GenerateOtsuLungCast
[ 26%] Built target GenerateOtsuLungCast
Linking CXX executable ../Testing/bin/GenerateOtsuLungCastTest

collect2: error: ld returned 1 exit status

[ 26%] Built target GenerateOtsuLungCastTest
[ 26%] Built target GenerateAtlasConvexHullLib
Linking CXX executable ../../bin/GenerateAtlasConvexHull
[ 26%] Built target GenerateAtlasConvexHull
Linking CXX executable ../Testing/bin/GenerateAtlasConvexHullTest
[ 27%] Built target GenerateAtlasConvexHullTest
[ 27%] Built target RegisterLungAtlasLib
Linking CXX executable ../../bin/RegisterLungAtlas
[ 27%] Built target RegisterLungAtlas
Linking CXX executable ../Testing/bin/RegisterLungAtlasTest
[ 33%] Built target QualityControl
Linking CXX executable ../Testing/bin/QualityControlTest
[ 33%] Built target QualityControlTest
[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticlesLib
Linking CXX executable ../../bin/RemoveChestTypeFromLabelMapUsingParticles
[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticles
Linking CXX executable ../Testing/bin/RemoveChestTypeFromLabelMapUsingParticlesTest
[ 34%] Built target RemoveChestTypeFromLabelMapUsingParticlesTest
[ 34%] Built target SegmentLungLobesLib
Linking CXX executable ../../bin/SegmentLungLobes

collect2: error: ld returned 1 exit status

[ 35%] Built target SegmentLungLobes
Linking CXX executable ../Testing/bin/SegmentLungLobesTest
[ 36%] Built target SegmentLungLobesTest
[ 37%] Built target ReadDicomWriteTagsLib
Linking CXX executable ../../bin/ReadDicomWriteTags
[ 37%] Built target ReadDicomWriteTags
Linking CXX executable ../Testing/bin/ReadDicomWriteTagsTest
[ 37%] Built target ReadDicomWriteTagsTest
[ 38%] Built target SplitLeftLungRightLungLib
Linking CXX executable ../../bin/SplitLeftLungRightLung
[ 38%] Built target SplitLeftLungRightLung
Linking CXX executable ../Testing/bin/SplitLeftLungRightLungTest
[ 38%] Built target SplitLeftLungRightLungTest
[ 39%] Built target ExtractChestLabelMapLib
Linking CXX executable ../../bin/ExtractChestLabelMap

collect2: error: ld returned 1 exit status

[ 39%] Built target ExtractChestLabelMap
Linking CXX executable ../Testing/bin/ExtractChestLabelMapTest
[ 39%] Built target ExtractChestLabelMapTest
[ 39%] Built target LabelParticlesByChestRegionChestTypeLib
Linking CXX executable ../../bin/LabelParticlesByChestRegionChestType
[ 40%] Built target LabelParticlesByChestRegionChestType
Linking CXX executable ../Testing/bin/LabelParticlesByChestRegionChestTypeTest
[ 41%] Built target LabelParticlesByChestRegionChestTypeTest
[ 42%] Built target GenerateStenciledLabelMapFromParticlesLib
Linking CXX executable ../../bin/GenerateStenciledLabelMapFromParticles
collect2: error: ld returned 1 exit status

[ 42%] Built target GenerateStenciledLabelMapFromParticles
Linking CXX executable ../Testing/bin/GenerateStenciledLabelMapFromParticlesTest

collect2: error: ld returned 1 exit status

[ 42%] Built target GenerateStenciledLabelMapFromParticlesTest
[ 43%] Built target GenerateDistanceMapFromLabelMapLib
Linking CXX executable ../../bin/GenerateDistanceMapFromLabelMap
[ 43%] Built target GenerateDistanceMapFromLabelMap
Linking CXX executable ../Testing/bin/GenerateDistanceMapFromLabelMapTest
[ 43%] Built target GenerateDistanceMapFromLabelMapTest
[ 44%] Built target FilterVesselParticleDataLib
Linking CXX executable ../../bin/FilterVesselParticleData

collect2: error: ld returned 1 exit status

[ 44%] Built target FilterVesselParticleData
Linking CXX executable ../Testing/bin/FilterVesselParticleDataTest
[ 44%] Built target FilterVesselParticleDataTest
[ 45%] Built target FilterAirwayParticleDataLib
Linking CXX executable ../../bin/FilterAirwayParticleData
[ 45%] Built target FilterAirwayParticleData
Linking CXX executable ../Testing/bin/FilterAirwayParticleDataTest
[ 45%] Built target FilterAirwayParticleDataTest
[ 46%] Built target ScourParticleDataLib
Linking CXX executable ../../bin/ScourParticleData
[ 60%] Built target ConvertLabelMapValueToChestRegionChestTypeTest
[ 60%] Built target GenerateRegionHistogramsAndParenchymaPhenotypesLib
Linking CXX executable ../../bin/GenerateRegionHistogramsAndParenchymaPhenotypes
[ 60%] Built target GenerateRegionHistogramsAndParenchymaPhenotypes
Linking CXX executable ../Testing/bin/GenerateRegionHistogramsAndParenchymaPhenotypesTest
[ 61%] Built target GenerateRegionHistogramsAndParenchymaPhenotypesTest
[ 61%] Built target ComputeDistanceMapLib
Linking CXX executable ../../bin/ComputeDistanceMap
[ 62%] Built target ComputeDistanceMap
Linking CXX executable ../Testing/bin/ComputeDistanceMapTest

collect2: error: ld returned 1 exit status

[ 63%] Built target ComputeDistanceMapTest
[ 64%] Built target TransferFieldDataToFromPointDataLib
Linking CXX executable ../../bin/TransferFieldDataToFromPointData
[ 64%] Built target TransferFieldDataToFromPointData
Linking CXX executable ../Testing/bin/TransferFieldDataToFromPointDataTest
[ 64%] Built target TransferFieldDataToFromPointDataTest
[ 64%] Built target PerturbParticlesLib
Linking CXX executable ../../bin/PerturbParticles
[ 64%] Built target PerturbParticles
Linking CXX executable ../Testing/bin/PerturbParticlesTest
[ 70%] Built target GetTransformationSimilarityMetric
Linking CXX executable ../Testing/bin/GetTransformationSimilarityMetricTest
[ 70%] Built target GetTransformationSimilarityMetricTest
[ 71%] Built target GetTransformationKappa2DLib
Linking CXX executable ../../bin/GetTransformationKappa2D
[ 71%] Built target GetTransformationKappa2D
Linking CXX executable ../Testing/bin/GetTransformationKappa2DTest
[ 71%] Built target GetTransformationKappa2DTest
[ 72%] Built target GetTransformationKappaLib
Linking CXX executable ../../bin/GetTransformationKappa

collect2: error: ld returned 1 exit status

[ 73%] Built target GetTransformationKappa
Linking CXX executable ../Testing/bin/GetTransformationKappaTest
[ 73%] Built target GetTransformationKappaTest
[ 74%] Built target ReadWriteImageDataLib
Linking CXX executable ../../bin/ReadWriteImageData
[ 74%] Built target ReadWriteImageData
Linking CXX executable ../Testing/bin/ReadWriteImageDataTest
[ 74%] Built target ReadWriteImageDataTest
[ 74%] Built target GetStructuresInLabelMapLib
Linking CXX executable ../../bin/GetStructuresInLabelMap
Linking CXX executable ../Testing/bin/ConvertChestRegionChestTypeToLabelMapValueTest
[ 89%] Built target ConvertChestRegionChestTypeToLabelMapValueTest
[ 89%] Built target FilterConnectedComponentsHelper
[ 90%] Built target FilterConnectedComponentsLib
Linking CXX executable ../../bin/FilterConnectedComponents
[ 91%] Built target FilterConnectedComponents
Linking CXX executable ../Testing/bin/FilterConnectedComponentsTest
[ 91%] Built target FilterConnectedComponentsTest
[ 92%] Built target EnhanceFissuresInImageLib
Linking CXX executable ../../bin/EnhanceFissuresInImage

collect2: error: ld returned 1 exit status

[ 92%] Built target EnhanceFissuresInImage
Linking CXX executable ../Testing/bin/EnhanceFissuresInImageTest
[ 92%] Built target EnhanceFissuresInImageTest
[ 93%] Built target ComputeFissureFeatureVectorsLib
Linking CXX executable ../../bin/ComputeFissureFeatureVectors
[ 93%] Built target ComputeFissureFeatureVectors
Linking CXX executable ../Testing/bin/ComputeFissureFeatureVectorsTest
[ 93%] Built target ComputeFissureFeatureVectorsTest
[ 93%] Built target FitLobeSurfaceModelsToParticleDataLib
Linking CXX executable ../../bin/FitLobeSurfaceModelsToParticleData
View Errors Summary


Build Warnings (1)
-- Looking for libavformat/avformat.h
-- Looking for libavformat/avformat.h - not found
-- Looking for ffmpeg/avformat.h
-- Looking for ffmpeg/avformat.h - not found
-- found IPP (ICV version): 8.2.1 [8.2.1]
-- at: /.../CIP-master-build/OpenCV/3rdparty/ippicv/unpack/ippicv_lnx
-- Could NOT find PythonInterp: Found unsuitable version "2.7.11", but required is at least "3.4" (found /.../CIP-master-build/CIPPython-install/bin/python)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.11", but required is at least "3.2" (found /.../CIP-master-build/CIPPython-install/bin/python)
-- Found Sphinx 1.2.3: /home/ec2-user/anaconda/bin/sphinx-build
-- Could NOT find JNI (missing:  JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH) 

CMake Warning at cmake/OpenCVDetectOpenCL.cmake:22 (message):

  Can't use OpenCL
Call Stack (most recent call first):
  CMakeLists.txt:493 (include)


-- Could NOT find Matlab (missing:  MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN) 
-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!

View Warnings Summary


Test (48  passed, 10 failed, 4 not run)
 
View Tests Summary