Site Name: ip-172-31-44-204.ec2.internal
Build Name: CIP-master-Linux-3.10.0-123.el7.x86_64-x86_64-incr-SL-ON (view notes)
Stamp: 20160206-0400-Nightly (related builds)
Time: 2016-02-06T00:15:13 EST
Type: Nightly

OS Name: Linux
OS Platform: x86_64
OS Release: 3.10.0-123.el7.x86_64
OS Version: #1 SMP Mon May 5 11:16:57 EDT 2014
Compiler Version: unknown
CTest version: ctest-2.8.11

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Stage: Update (0 errors, 0 warnings)

Start Time: 2016-02-06T00:14:53 EST
End Time: 2016-02-06T00:14:55 EST
Update Command: "/usr/bin/git" "fetch"
Update Type: GIT
Number of Updates: 0

Configure (0 errors, 0 warnings)

Start Time: 2016-02-06T00:14:56 EST
End Time: 2016-02-06T00:15:08 EST
Configure Command: /usr/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/home/ec2-user/Projects/CIP-master"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
Wrapping ChestConventions
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ec2-user/Projects/CIP-master-build/CIP-build

View Configure Summary

Build (50 errors, 1 warnings)

Build command: /usr/bin/gmake -i
Start Time: 2016-02-06T00:15:13 EST
End Time: 2016-02-06T00:16:43 EST

The following NEW packages will be INSTALLED:

    mkl:   11.3.1-0          

The following packages will be UPDATED:

    numpy: 1.10.2-py27_0      --> 1.10.4-py27_0     
    scipy: 0.16.1-np110py27_0 --> 0.17.0-np110py27_1


Error: Missing write permissions in: /.../CIP-master-build/CIPPython-install

#
# You don't appear to have the necessary permissions to install packages
# into the install area '/.../CIP-master-build/CIPPython-install'.
# However you can clone this environment into your home directory and
# then make changes to it.
# This may be done using the command:
#
# $ conda create -n my_root --clone=/.../CIP-master-build/CIPPython-install

[ 36%] Performing installvtk step for 'CIPPython'
    numpy-1.10.4               |           py27_0         6.0 MB

The following NEW packages will be INSTALLED:

    mkl:   11.3.1-0     

The following packages will be UPDATED:

    numpy: 1.10.2-py27_0 --> 1.10.4-py27_0


Error: Missing write permissions in: /.../CIP-master-build/CIPPython-install

#
# You don't appear to have the necessary permissions to install packages
# into the install area '/.../CIP-master-build/CIPPython-install'.
# However you can clone this environment into your home directory and
# then make changes to it.
# This may be done using the command:
#
# $ conda create -n my_root --clone=/.../CIP-master-build/CIPPython-install

[ 36%] Performing installnose step for 'CIPPython'
#
sphinx                    1.3.5                    py27_0  
[ 36%] Completed 'CIPPython'
[ 36%] Built target CIPPython
[ 36%] Performing update step for 'OpenCV'
[ 36%] Performing configure step for 'OpenCV'
loading initial cache file /.../CIP-master-build/OpenCV-prefix/tmp/OpenCV-cache.cmake
-- Detected version of GNU GCC: 48 (408)
-- Found ZLIB: /lib64/libz.so (found suitable version "1.2.7", minimum required is "1.2.3") 
-- Could NOT find TIFF (missing:  TIFF_LIBRARY TIFF_INCLUDE_DIR) 

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/3rdparty/libtiff/tif_config.h.tmp

CMake Error: : System Error: No space left on device

CMake Error at 3rdparty/libtiff/CMakeLists.txt:24 (configure_file):

  configure_file Problem configuring file


-- Could NOT find JPEG (missing:  JPEG_LIBRARY JPEG_INCLUDE_DIR) 
-- Could NOT find Jasper (missing:  JASPER_LIBRARIES JASPER_INCLUDE_DIR) 
-- Found ZLIB: /lib64/libz.so (found version "1.2.7") 
-- Could NOT find PNG (missing:  PNG_LIBRARY PNG_PNG_INCLUDE_DIR) 

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/3rdparty/openexr/IlmBaseConfig.h.tmp

CMake Error: : System Error: No space left on device

CMake Error at 3rdparty/openexr/CMakeLists.txt:14 (configure_file):

  configure_file Problem configuring file



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/3rdparty/openexr/OpenEXRConfig.h.tmp

CMake Error: : System Error: No space left on device

CMake Error at 3rdparty/openexr/CMakeLists.txt:16 (configure_file):

  configure_file Problem configuring file


-- checking for module 'gtk+-3.0'
--   package 'gtk+-3.0' not found
-- checking for module 'gtk+-2.0'
--   package 'gtk+-2.0' not found
-- checking for module 'gthread-2.0'
--   package 'gthread-2.0' not found
-- checking for module 'gstreamer-base-1.0'
--   package 'gstreamer-riff-0.10' not found
-- checking for module 'gstreamer-pbutils-0.10'
--   package 'gstreamer-pbutils-0.10' not found
-- checking for module 'libdc1394-2'
--   package 'libdc1394-2' not found
-- checking for module 'libdc1394'
--   package 'libdc1394' not found
-- checking for module 'libv4l1'
--   package 'libv4l1' not found
-- Looking for linux/videodev.h

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CheckIncludeFile.c.tmp

CMake Error: : System Error: No space left on device

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:40 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:158 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for linux/videodev.h - not found

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:48 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:158 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for linux/videodev2.h

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CheckIncludeFile.c.tmp

CMake Error: : System Error: No space left on device

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:40 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:159 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for linux/videodev2.h - not found

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:48 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:159 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for sys/videoio.h

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CheckIncludeFile.c.tmp

CMake Error: : System Error: No space left on device

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:40 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:160 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for sys/videoio.h - not found
-- checking for module 'libavcodec'

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:48 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:160 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


--   package 'libavcodec' not found
-- checking for module 'libavformat'
--   package 'libavformat' not found
-- checking for module 'libavutil'
--   package 'libavutil' not found
-- checking for module 'libswscale'
--   package 'libswscale' not found
-- Looking for libavformat/avformat.h

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CheckIncludeFile.c.tmp

CMake Error: : System Error: No space left on device

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:40 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:194 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for libavformat/avformat.h - not found

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:48 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:194 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for ffmpeg/avformat.h

CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CheckIncludeFile.c.tmp

CMake Error: : System Error: No space left on device

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:40 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:195 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- Looking for ffmpeg/avformat.h - not found

CMake Error at /usr/share/cmake/Modules/CheckIncludeFile.cmake:48 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  cmake/OpenCVFindLibsVideo.cmake:195 (CHECK_INCLUDE_FILE)
  CMakeLists.txt:453 (include)


-- found IPP (ICV version): 8.2.1 [8.2.1]
-- at: /.../CIP-master-build/OpenCV/3rdparty/ippicv/unpack/ippicv_lnx
-- Could NOT find PythonInterp: Found unsuitable version "2.7.11", but required is at least "3.4" (found /.../CIP-master-build/CIPPython-install/bin/python)
-- Could NOT find PythonInterp: Found unsuitable version "2.7.11", but required is at least "3.2" (found /.../CIP-master-build/CIPPython-install/bin/python)
-- Could NOT find JNI (missing:  JAVA_AWT_LIBRARY JAVA_JVM_LIBRARY JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 JAVA_AWT_INCLUDE_PATH) 

CMake Error at cmake/OpenCVDetectOpenCL.cmake:15 (try_compile):

  Failed to open

    /.../CIP-master-build/OpenCV-build/CMakeFiles/CMakeTmp/CMakeLists.txt

  No space left on device
Call Stack (most recent call first):
  CMakeLists.txt:493 (include)



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/cmake_uninstall.cmake.tmp

CMake Error: : System Error: No space left on device

CMake Error at cmake/OpenCVExtraTargets.cmake:4 (CONFIGURE_FILE):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:527 (include)


-- Module opencv_highgui disabled because opencv_videoio dependency can't be resolved!
-- Module opencv_shape disabled because opencv_video dependency can't be resolved!
-- Module opencv_stitching disabled because opencv_calib3d dependency can't be resolved!
-- Module opencv_superres disabled because opencv_video dependency can't be resolved!
-- Module opencv_ts disabled because opencv_videoio dependency can't be resolved!
CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/cvconfig.h.tmp

CMake Error: : System Error: No space left on device

CMake Error at cmake/OpenCVGenHeaders.cmake:2 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:573 (include)



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/opencv2/opencv_modules.hpp.tmp

CMake Error: : System Error: No space left on device

CMake Error at cmake/OpenCVGenHeaders.cmake:25 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:573 (include)



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/unix-install/opencv.pc.tmp

CMake Error: : System Error: No space left on device

CMake Error at cmake/OpenCVGenPkgconfig.cmake:79 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:576 (include)



CMake Error: cannot write to file "/.../CIP-master-build/OpenCV-build/OpenCVModules.cmake": No space left on device

CMake Error at cmake/OpenCVGenConfig.cmake:84 (export):

  export could not write export file.
Call Stack (most recent call first):
  CMakeLists.txt:582 (include)



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/OpenCVConfig.cmake.tmp

CMake Error: : System Error: No space left on device

CMake Error at cmake/OpenCVGenConfig.cmake:94 (configure_file):

  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:582 (include)



CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/OpenCVConfig-version.cmake.tmp

CMake Error: : System Error: No space left on device
CMake Error at cmake/OpenCVGenConfig.cmake:96 (configure_file):
  configure_file Problem configuring file
Call Stack (most recent call first):
  CMakeLists.txt:582 (include)


CMake Error: Could not open file for write in copy operation /.../CIP-master-build/OpenCV-build/unix-install/OpenCVConfig.cmake.tmp
CMake Error: : System Error: No space left on device
CMake Error at cmake/OpenCVGenConfig.cmake:123 (configure_file):
The maximum number of reported warnings or errors has been reached!!!

View Errors Summary


Build Warnings (1)
CMake Warning at cmake/OpenCVDetectOpenCL.cmake:22 (message):

  Can't use OpenCL
Call Stack (most recent call first):
  CMakeLists.txt:493 (include)


-- Could NOT find Matlab (missing:  MATLAB_MEX_SCRIPT MATLAB_INCLUDE_DIRS MATLAB_ROOT_DIR MATLAB_LIBRARIES MATLAB_LIBRARY_DIRS MATLAB_MEXEXT MATLAB_ARCH MATLAB_BIN) 


View Warnings Summary


Test (61  passed, 1 failed, 0 not run)
 
View Tests Summary