Site Name: BWH004658
Build Name: CIP-Darwin-15.2.0-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160127-0400-Nightly (related builds)
Time: 2016-01-27T12:08:08 EST
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.11.2
OS Version: 15C50
Compiler Version: unknown
CTest version: ctest-3.0.2

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Configure (0 errors, 0 warnings)

Start Time: 2016-01-27T12:07:30 EST
End Time: 2016-01-27T12:08:06 EST
Configure Command: /Applications/CMake.3.0.2.app/Contents/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/jonieva/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /Users/jonieva/Projects/CIP-build/CIPPython-install/bin/python
Installing cip_python tools in /Users/jonieva/Projects/CIP-build/CIP-build
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/jonieva/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 52 warnings)

Build command: -- -i
Start Time: 2016-01-27T12:08:08 EST
End Time: 2016-01-27T12:10:44 EST

View Errors Summary


Build Warnings (52)
Linking CXX shared library ../../lib/libvtkftgl-6.3.dylib
[ 32%] Built target vtkftgl
Linking CXX shared library ../../lib/libvtkRenderingFreeType-6.3.dylib
[ 33%] Built target vtkRenderingFreeType
Linking CXX shared library ../../lib/libvtkRenderingContext2D-6.3.dylib
[ 33%] Built target vtkRenderingContext2D
Linking CXX shared library ../../lib/libvtkChartsCore-6.3.dylib
[ 34%] Built target vtkChartsCore
[ 34%] Built target vtkDICOMParser
Linking CXX shared library ../../lib/libvtkIOCore-6.3.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(compress.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(uncompr.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(deflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(trees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(adler32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(crc32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inffast.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inftrees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(zutil.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 35%] Built target vtkIOCore
Linking CXX shared library ../../lib/libvtkIOLegacy-6.3.dylib
[ 36%] Built target vtkIOLegacy
[ 36%] Built target vtkHashSource
Linking CXX shared library ../../lib/libvtkParallelCore-6.3.dylib
[ 37%] Built target vtkParallelCore
Linking CXX shared library ../../lib/libvtkFiltersAMR-6.3.dylib
[ 37%] Built target vtkFiltersAMR
Linking CXX shared library ../../lib/libvtkFiltersFlowPaths-6.3.dylib
[ 38%] Built target vtkFiltersFlowPaths
[ 42%] Built target vtkFiltersParallel
Linking CXX shared library ../../lib/libvtkFiltersParallelImaging-6.3.dylib
[ 43%] Built target vtkFiltersParallelImaging
[ 43%] Built target vtkFiltersProgrammable
[ 43%] Built target vtkFiltersSMP
[ 43%] Built target vtkFiltersSelection
[ 43%] Built target vtkFiltersTexture
[ 43%] Built target verdict
[ 43%] Built target vtkFiltersVerdict
Linking CXX shared library ../../lib/libvtkIOGeometry-6.3.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(gzio.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 44%] Built target vtkIOGeometry
[ 44%] Built target vtkexpat
Linking CXX shared library ../../lib/libvtkIOXMLParser-6.3.dylib
[ 44%] Built target vtkIOXMLParser
Linking CXX shared library ../../lib/libvtkIOXML-6.3.dylib
[ 45%] Built target vtkIOXML
Linking CXX shared library ../../../lib/libvtkmetaio-6.3.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(crc32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(deflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(trees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(adler32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(compress.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inffast.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inftrees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(zutil.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 46%] Built target vtkmetaio
[ 48%] Built target vtkjpeg
Linking C shared library ../../../lib/libvtkpng-6.3.dylib
[ 49%] Built target vtkpng
[ 49%] Built target vtkmkg3states
Linking C shared library ../../../lib/libvtktiff-6.3.dylib
[ 51%] Built target vtktiff
Linking CXX shared library ../../lib/libvtkIOImage-6.3.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(gzio.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 52%] Built target vtkIOImage
Linking CXX shared library ../../lib/libvtkImagingHybrid-6.3.dylib
[ 52%] Built target vtkImagingHybrid
Linking CXX shared library ../../lib/libvtkInfovisLayout-6.3.dylib
[ 53%] Built target vtkInfovisLayout
[ 54%] Built target vtkInteractionStyle
[ 54%] Built target vtkImagingColor
Linking CXX shared library ../../lib/libvtkRenderingAnnotation-6.3.dylib
[ 55%] Built target vtkRenderingAnnotation
[ 56%] Built target vtkRenderingVolume
[ 42%] Built target ITKImageFunction-all
[ 42%] Built target ITKImageGrid-all
[ 42%] Built target ITKAnisotropicSmoothing-all
[ 42%] Built target ITKLabelMap
[ 42%] Built target ITKLabelMap-all
[ 42%] Built target ITKImageCompose-all
[ 42%] Built target ITKMesh
[ 42%] Built target ITKMesh-all
[ 42%] Built target ITKZLIB-all
Linking CXX shared library ../../../../../../lib/libITKMetaIO-4.9.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(crc32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(deflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(trees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(adler32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(compress.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inffast.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inftrees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(zutil.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 44%] Built target ITKMetaIO
[ 44%] Built target ITKMetaIO-all
[ 44%] Built target ITKSpatialObjects
[ 44%] Built target ITKSpatialObjects-all
[ 44%] Built target ITKImageStatistics-all
[ 45%] Built target ITKPath
[ 45%] Built target ITKPath-all
[ 45%] Built target ITKImageIntensity-all
[ 45%] Built target ITKThresholding-all
[ 45%] Built target ITKConnectedComponents-all
[ 48%] Built target ITKDisplacementField-all
[ 48%] Built target ITKEigen-all
[ 48%] Built target ITKEXPAT
[ 48%] Built target ITKExpat-all
[ 48%] Built target ITKIOXML
[ 48%] Built target ITKIOXML-all
[ 48%] Built target ITKIOSpatialObjects
[ 48%] Built target ITKIOSpatialObjects-all
[ 48%] Built target ITKRegistrationCommon-all
Linking CXX shared library ../../../../lib/libITKFEM-4.9.dylib

ld: warning: object file (CMakeFiles/ITKFEM.dir/dsrc2c.c.o) was built for newer OSX version (10.11) than being linked (10.6)

[ 50%] Built target ITKFEM
[ 50%] Built target ITKFEM-all
[ 50%] Built target ITKPDEDeformableRegistration-all
[ 50%] Built target ITKFEMRegistration-all
[ 50%] Built target gdcmuuid
[ 53%] Built target gdcmjpeg8
[ 56%] Built target gdcmjpeg12
[ 57%] Built target gdcmCommon
Linking CXX shared library ../../../../../../../lib/libitkgdcmDSED-4.9.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(crc32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(deflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(trees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(adler32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(compress.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inffast.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inftrees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(zutil.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 59%] Built target gdcmDSED
Linking CXX shared library ../../../../../../../lib/libitkgdcmIOD-4.9.dylib
[ 60%] Built target gdcmIOD
[ 64%] Built target gdcmjpeg16
[ 65%] Built target gdcmopenjpeg
Linking CXX shared library ../../../../../../../lib/libitkgdcmDICT-4.9.dylib
[ 66%] Built target gdcmDICT
[ 66%] Built target gdcmsocketxx
[ 66%] Built target gdcmcharls
Linking CXX shared library ../../../../../../../lib/libitkgdcmMSFF-4.9.dylib
[ 88%] Built target ITKIOCSV
[ 88%] Built target ITKIOCSV-all
Linking CXX shared library ../../../../lib/libITKIOGDCM-4.9.dylib
[ 88%] Built target ITKIOGDCM
[ 88%] Built target ITKIOGDCM-all
[ 88%] Built target ITKIOIPL
[ 88%] Built target ITKIOIPL-all
[ 88%] Built target ITKIOGE
[ 88%] Built target ITKIOGE-all
Linking CXX shared library ../../../../lib/libITKIOGIPL-4.9.dylib

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(gzio.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(crc32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(deflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inflate.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(zutil.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(trees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(adler32.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(compress.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inffast.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

ld: warning: object file (/.../CIP-build/zlib-install/lib/libzlib.a(inftrees.c.o)) was built for newer OSX version (10.11) than being linked (10.6)

[ 88%] Built target ITKIOGIPL
[ 88%] Built target ITKIOGIPL-all
Linking CXX shared library ../../../../lib/libITKIOHDF5-4.9.dylib
[ 88%] Built target ITKIOHDF5
[ 88%] Built target ITKIOHDF5-all
[ 90%] Built target itkjpeg
[ 90%] Built target ITKJPEG-all
[ 90%] Built target ITKIOJPEG
[ 90%] Built target ITKIOJPEG-all
[ 90%] Built target itkmkg3states
# packages in environment at /.../CIP-build/CIPPython-install:
#
nose                      1.3.7                    py27_0  
[ 64%] Completed 'CIPPython'
[ 68%] Built target CIPPython
[ 69%] Performing update step for 'teem'
[ 70%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

Linking C executable ../../bin/vprobe
[100%] Built target vprobe
[ 73%] No install step for 'teem'
[ 74%] Completed 'teem'
[ 78%] Built target teem
[ 79%] Performing update step for 'SlicerExecutionModel'
[ 81%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.


View Warnings Summary


Test (69  passed, 7 failed, 0 not run)
 
View Tests Summary