Site Name: bwh002376.bwh.harvard.edu
Build Name: CIP-Darwin-13.4.0-x86_64-incr-SL-ON-SL-OFF (view notes)
Stamp: 20160114-0400-Nightly (related builds)
Time: 2016-01-13T23:06:52 EST
Type: Nightly

OS Name: Mac OS X
OS Platform: x86_64
OS Release: 10.9.5
OS Version: 13F1134
Compiler Version: unknown
CTest version: ctest-3.0.2

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Configure (0 errors, 0 warnings)

Start Time: 2016-01-13T23:06:27 EST
End Time: 2016-01-13T23:06:51 EST
Configure Command: /Users/acil-user/Library/Enthought/Canopy_64bit/User/bin/cmake -DCMAKE_BUILD_TYPE:STRING=Release "-GUnix Makefiles" "/Users/acil-user/Projects/CIP"
Configure Return Value: 0
Configure Output: 
----------- ENTRY ------------
----------- PHASE 2 ------------
Configuring CIP...
ChestConv: ON
----------- DONE ------------
-- Configuring SEM CLI module: ConvertDicom
-- Configuring SEM CLI module: MergeParticleDataSets
-- Configuring SEM CLI module: RemoveParticlesFromParticlesDataSet
-- Configuring SEM CLI module: ExtractParticlesFromChestRegionChestType
-- Configuring SEM CLI module: GenerateOtsuLungCast
-- Configuring SEM CLI module: GenerateAtlasConvexHull
-- Configuring SEM CLI module: RegisterLungAtlas
-- Configuring SEM CLI module: ResampleLabelMap
-- Configuring SEM CLI module: RescaleLabelMap
-- Configuring CIP
-- Configuring SEM CLI module: ResampleCT
-- Configuring SEM CLI module: QualityControl
-- Configuring SEM CLI module: RemoveChestTypeFromLabelMapUsingParticles
-- Configuring SEM CLI module: SegmentLungLobes
-- Configuring SEM CLI module: ReadDicomWriteTags
-- Configuring SEM CLI module: SplitLeftLungRightLung
-- Configuring SEM CLI module: ExtractChestLabelMap
-- Configuring SEM CLI module: LabelParticlesByChestRegionChestType
-- Configuring SEM CLI module: GenerateStenciledLabelMapFromParticles
-- Configuring SEM CLI module: GenerateDistanceMapFromLabelMap
-- Configuring SEM CLI module: FilterVesselParticleData
-- Configuring SEM CLI module: FilterAirwayParticleData
-- Configuring SEM CLI module: ScourParticleData
-- Configuring SEM CLI module: ReadNRRDsWriteVTK
-- Configuring SEM CLI module: ReadVTKWriteNRRDs
-- Configuring SEM CLI module: ComputeCrossSectionalArea
-- Configuring SEM CLI module: ComputeIntensityStatistics
-- Configuring SEM CLI module: FilterFissureParticleData
-- Configuring SEM CLI module: GenerateLobeSurfaceModels
-- Configuring SEM CLI module: ClassifyFissureParticles
-- Configuring SEM CLI module: CropLung
-- Configuring SEM CLI module: GenerateModel
-- Configuring SEM CLI module: GenerateImageSubVolumes
-- Configuring SEM CLI module: GenerateMedianFilteredImage
-- Configuring SEM CLI module: FindPatchMatch
-- Configuring SEM CLI module: TransferRegionAndTypeIndicesToFromPoints
-- Configuring SEM CLI module: EvaluateLungLobeSegmentationResults
-- Configuring SEM CLI module: ConvertLabelMapValueToChestRegionChestType
-- Configuring SEM CLI module: GenerateRegionHistogramsAndParenchymaPhenotypes
-- Configuring SEM CLI module: ComputeDistanceMap
-- Configuring SEM CLI module: TransferFieldDataToFromPointData
-- Configuring SEM CLI module: PerturbParticles
-- Configuring SEM CLI module: ReadWriteRegionAndTypePoints
-- Configuring SEM CLI module: PerformMorphological
-- Configuring SEM CLI module: GenerateOverlayImages
-- Configuring SEM CLI module: GetTransformationSimilarityMetric
-- Configuring SEM CLI module: GetTransformationKappa2D
-- Configuring SEM CLI module: GetTransformationKappa
-- Configuring SEM CLI module: ReadWriteImageData
-- Configuring SEM CLI module: GetStructuresInLabelMap
-- Configuring SEM CLI module: GeneratePartialLungLabelMap
-- Configuring SEM CLI module: ReadVidaWriteCIP
-- Configuring SEM CLI module: RegisterLabelMaps
-- Configuring SEM CLI module: RegisterCT
-- Configuring SEM CLI module: MergeChestLabelMaps
-- Configuring SEM CLI module: MaskOutLabelMapStructures
-- Configuring SEM CLI module: ComputeFeatureStrength
-- Configuring SEM CLI module: LabelMapFromRegionAndTypePoints
-- Configuring SEM CLI module: GenerateSimpleLungMask
-- Configuring SEM CLI module: GenerateBinaryThinning3D
-- Configuring SEM CLI module: ConvertChestRegionChestTypeToLabelMapValue
-- Configuring SEM CLI module: FilterConnectedComponents
-- Configuring SEM CLI module: EnhanceFissuresInImage
-- Configuring SEM CLI module: ComputeFissureFeatureVectors
-- Configuring SEM CLI module: FitLobeSurfaceModelsToParticleData
-- Configuring SEM CLI module: GenerateLesionSegmentation
-- Configuring SEM CLI module: RemapLabelMap
-- Configuring SEM CLI module: GenerateNLMFilteredImage
-- Configuring SEM CLI module: ComputeAirwayWallFromParticles
-- Configuring SEM CLI module: RegionTypeLocationsToROIVolume
-- Configuring SEM CLI module: ExtractFissureBoundaryFromLobeMap
-- Configuring SEM CLI module: ExecuteSystemCommand
Wrapping ChestConventions with Python in /Users/acil-user/Projects/CIP-build/CIPPython-install/bin/python
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/acil-user/Projects/CIP-build/CIP-build

View Configure Summary

Build (0 errors, 7 warnings)

Build command: -- -i
Start Time: 2016-01-13T23:06:52 EST
End Time: 2016-01-13T23:08:40 EST

View Errors Summary


Build Warnings (7)
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv/highgui.h
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv/ml.h
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/opencv.hpp
-- Installing: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal/intrin.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal/intrin_cpp.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal/intrin_neon.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal/intrin_sse.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/hal/defs.h

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a(arithm.cpp.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a(color.cpp.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a(filter.cpp.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a(resize.cpp.o) has no symbols

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /.../CIP-build/OpenCV-install/lib/libopencv_hal.a(warp.cpp.o) has no symbols

-- Installing: /.../CIP-build/OpenCV-install/lib/libopencv_core.3.0.0.dylib
-- Up-to-date: /.../CIP-build/OpenCV-install/lib/libopencv_core.3.0.dylib
-- Up-to-date: /.../CIP-build/OpenCV-install/lib/libopencv_core.dylib
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/block.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/border_interpolate.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/color.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/common.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/datamov_utils.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/dynamic_smem.hpp
-- Up-to-date: /.../CIP-build/OpenCV-install/include/opencv2/core/cuda/emulation.hpp
# packages in environment at /.../CIP-build/CIPPython-install:
#
nose                      1.3.7                    py27_0  
[ 67%] Completed 'CIPPython'
[ 71%] Built target CIPPython
[ 72%] Performing update step for 'teem'
[ 73%] Performing configure step for 'teem'
loading initial cache file /.../CIP-build/teem-prefix/tmp/teem-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   teem

This warning is for project developers.  Use -Wno-dev to suppress it.

Linking C executable ../../bin/vprobe
[100%] Built target vprobe
[ 75%] No install step for 'teem'
[ 77%] Completed 'teem'
[ 80%] Built target teem
[ 81%] Performing update step for 'SlicerExecutionModel'
[ 82%] Performing configure step for 'SlicerExecutionModel'
loading initial cache file /.../CIP-build/SlicerExecutionModel-prefix/tmp/SlicerExecutionModel-cache.cmake
-- Configuring done
-- Generating done

CMake Warning (dev):

  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ModuleDescriptionParser

This warning is for project developers.  Use -Wno-dev to suppress it.


View Warnings Summary


Test (71  passed, 5 failed, 0 not run)
 
View Tests Summary